Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 8.5e-154 547.0 276 100.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-86 323.6 260 63.1
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-86 322.8 260 63.1
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 9.9e-86 320.9 276 60.1
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.6e-83 313.5 273 59.3
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.6e-83 313.5 273 60.4
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 6.6e-82 308.1 269 60.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.7e-80 302.0 264 60.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 6.2e-80 301.6 266 60.2
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 5.2e-79 298.5 260 61.2
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 9.0e-79 297.7 272 57.7
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.0e-78 296.6 276 59.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 7.6e-78 294.7 274 56.9
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 2.2e-77 293.1 260 60.4
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 6.4e-77 291.6 265 59.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 6.4e-77 291.6 272 61.4
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 6.4e-77 291.6 262 59.2
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 1.9e-76 290.0 261 60.9
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.2e-76 288.9 273 56.4
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 7.1e-76 288.1 273 56.0
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 7.1e-76 288.1 260 58.8
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.2e-75 287.3 273 56.0
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.6e-75 287.0 266 57.1
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.6e-75 287.0 281 55.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-75 287.0 273 56.0
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-75 287.0 273 56.0
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 2.1e-75 286.6 272 56.2
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.5e-75 285.8 273 55.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 6.0e-75 285.0 269 56.9
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 6.0e-75 285.0 273 57.1
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 6.0e-75 285.0 279 54.8
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 7.8e-75 284.6 261 57.5
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.3e-74 283.1 273 57.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 3.9e-74 282.3 273 56.0
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.1e-74 282.0 273 55.7
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.3e-72 277.3 260 55.8
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.8e-72 276.2 273 54.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 3.6e-72 275.8 265 54.0
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-71 273.9 241 59.3
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.4e-71 273.1 262 57.3
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.0e-71 272.3 222 64.0
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 5.3e-71 271.9 262 56.1
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 6.9e-71 271.6 259 54.8
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-70 269.6 222 62.6
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.8e-69 265.8 268 54.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 6.4e-69 265.0 271 53.5
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-68 263.8 268 54.5
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.2e-68 262.7 262 56.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.8e-66 256.9 278 53.2
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.9e-66 255.8 220 61.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.1e-65 254.2 268 52.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.5e-65 253.8 267 51.7
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.5e-65 253.1 268 53.0
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 5.6e-65 251.9 269 50.2
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 7.4e-65 251.5 271 50.6
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 9.6e-65 251.1 269 52.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.6e-64 250.4 261 52.1
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.8e-64 249.6 269 50.6
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.8e-63 246.9 265 50.2
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.1e-63 246.1 267 49.8
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.0e-63 245.7 267 49.8
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.0e-63 244.6 268 48.5
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 1.2e-62 244.2 260 51.2
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-62 244.2 267 49.1
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.2e-62 244.2 265 49.8
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.5e-62 243.8 268 48.5
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 3.4e-62 242.7 268 48.5
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 5.8e-62 241.9 268 48.9
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 6.4e-61 238.4 266 52.3
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.4e-60 236.5 265 49.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 4.2e-60 235.7 261 47.9
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 4.2e-60 235.7 265 50.6
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.5e-60 235.3 262 49.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.7e-59 233.0 267 47.9
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 6.0e-59 231.9 258 49.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.9e-59 231.5 275 48.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.9e-59 231.5 275 48.4
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.8e-58 230.3 275 48.0
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.3e-58 229.9 266 48.1
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.0e-58 229.6 268 47.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.9e-58 229.2 266 50.8
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 5.1e-58 228.8 269 48.3
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.9e-57 226.9 268 44.8
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 4.3e-57 225.7 262 49.2
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 9.6e-57 224.6 250 52.0
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.8e-56 223.0 263 47.1
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.2e-56 221.9 269 47.6
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 8.2e-56 221.5 273 47.6
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.8e-55 220.3 275 50.2
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 6.9e-55 218.4 257 48.6
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.5e-54 217.2 263 46.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.6e-54 216.5 271 46.9
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.4e-54 216.1 261 49.8
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 5.8e-54 215.3 267 46.8
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.0e-53 214.5 270 44.4
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.0e-53 214.5 270 44.4
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.7e-53 213.8 262 46.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.2e-53 213.4 174 59.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.5e-52 208.8 262 45.0
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.6e-51 207.2 260 43.8
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 3.5e-51 206.1 265 44.5
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 6.0e-51 205.3 259 49.0
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 6.0e-51 205.3 263 45.2
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.3e-50 204.1 263 46.4
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.9e-50 202.6 266 44.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 5.1e-50 202.2 259 47.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 6.7e-50 201.8 259 46.7
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.9e-49 200.3 259 47.1
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 2.5e-49 199.9 259 45.9
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.3e-49 199.5 168 58.9
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 3.3e-49 199.5 259 47.9
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.3e-49 199.1 168 58.9
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.2e-48 196.8 267 43.8
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 1.1e-47 194.5 272 43.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 1.4e-47 194.1 268 45.1
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.4e-47 194.1 265 43.8
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 4.1e-47 192.6 259 47.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 5.3e-47 192.2 203 51.2
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.0e-47 191.4 203 50.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.2e-46 191.0 165 57.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.0e-46 190.3 269 42.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 3.4e-46 189.5 268 44.0
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 3.4e-46 189.5 268 44.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.3e-45 187.6 220 46.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.7e-45 187.2 273 42.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.9e-45 186.4 258 45.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 3.8e-45 186.0 265 43.8
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.5e-45 185.3 168 54.8
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.5e-45 185.3 168 54.8
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-44 184.1 209 51.2
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 1.6e-43 180.6 259 42.5
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.3e-42 176.8 262 41.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 1.5e-41 174.1 265 41.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.4e-41 171.8 116 70.7
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 1.4e-39 167.5 265 40.8
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.4e-39 166.8 158 50.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.1e-39 166.4 256 41.0
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.1e-39 166.0 257 38.5
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.5e-38 164.1 117 66.7
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-38 164.1 174 50.0
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.5e-38 162.5 122 68.0
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.2e-37 160.2 269 37.9
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 3.8e-37 159.5 197 46.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.7e-35 152.5 150 49.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.0e-34 151.4 184 45.1
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.4e-28 128.3 131 47.3
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.8e-26 124.0 175 44.6
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 3.3e-25 119.8 108 49.1
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.2e-22 111.3 127 41.7
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.5e-22 109.8 82 63.4
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.0e-14 84.0 261 29.1
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 7.7e-14 82.0 87 40.2
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.7e-13 80.9 283 26.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.2e-13 80.5 70 50.0
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 2.5e-12 77.0 91 39.6
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 4.2e-12 76.3 115 32.2
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.3e-10 70.5 320 23.8
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 4.5e-06 56.2 263 25.1


User provided reference genes

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