Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 8.4e-185 650.2 326 100.0
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 8.5e-153 543.9 329 81.2
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 5.0e-145 518.1 328 78.4
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 4.8e-140 501.5 326 76.1
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.8e-140 501.5 325 76.3
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.2e-140 500.7 325 75.1
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.4e-139 499.2 328 75.6
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 4.1e-139 498.4 325 73.8
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.1e-139 498.4 330 73.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 7.0e-139 497.7 328 73.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 7.0e-139 497.7 326 75.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 9.1e-139 497.3 327 75.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.6e-138 496.5 330 73.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.6e-138 495.7 330 72.4
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.5e-138 495.4 330 72.4
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.9e-136 489.6 328 74.1
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.5e-136 489.2 323 72.4
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.2e-136 488.8 323 72.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.2e-136 488.4 327 71.9
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.2e-136 488.4 331 71.9
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.5e-136 488.0 333 74.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.2e-135 486.9 328 74.7
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.1e-135 484.6 322 72.4
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 5.2e-134 481.5 322 71.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 4.4e-133 478.4 329 70.8
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.4e-133 478.4 329 70.8
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 4.4e-133 478.4 326 72.4
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.7e-133 478.0 319 73.4
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 7.5e-133 477.6 328 71.0
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 9.7e-133 477.2 322 71.1
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 9.7e-133 477.2 326 69.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.3e-132 476.9 327 72.8
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.3e-132 476.9 325 73.2
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.3e-132 476.9 325 70.5
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.8e-132 474.9 329 70.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.2e-132 474.2 322 70.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.1e-131 473.8 328 70.1
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.1e-131 471.9 323 70.9
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 5.3e-131 471.5 328 69.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.1e-131 470.7 322 70.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 9.1e-131 470.7 322 69.6
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.2e-130 470.3 322 72.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.2e-130 470.3 323 72.1
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.0e-130 469.5 323 70.0
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.0e-130 469.5 324 69.4
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 2.0e-130 469.5 326 71.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.7e-130 469.2 330 70.6
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 4.5e-130 468.4 326 71.8
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 5.9e-130 468.0 319 71.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 7.7e-130 467.6 323 70.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 7.7e-130 467.6 320 71.2
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 7.7e-130 467.6 323 71.5
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.7e-129 466.5 326 70.2
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-129 465.7 323 70.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.5e-129 464.5 329 71.1
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 6.5e-129 464.5 323 70.6
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 8.5e-129 464.2 323 70.3
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.1e-128 463.8 328 70.1
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-128 463.4 322 71.1
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.9e-128 463.0 319 69.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.5e-128 462.6 326 69.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 2.5e-128 462.6 321 71.0
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.5e-128 462.6 328 70.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 3.2e-128 462.2 323 70.6
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.7e-127 459.1 322 67.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.7e-127 459.1 326 69.0
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 8.0e-127 457.6 320 70.0
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.8e-126 456.4 370 62.4
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 5.2e-126 454.9 328 70.1
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 8.8e-126 454.1 329 68.1
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.4e-125 452.2 322 66.8
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 4.4e-125 451.8 324 69.4
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 7.5e-125 451.1 323 68.7
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-124 448.7 322 65.8
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.8e-123 446.4 330 68.2
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.4e-123 444.9 322 67.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-120 437.2 308 68.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.5e-120 436.0 323 65.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.8e-119 432.6 331 65.9
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.8e-119 432.6 327 66.4
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 8.0e-119 431.0 324 65.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.4e-117 425.2 278 75.2
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.3e-116 423.7 326 64.4
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.7e-116 423.3 306 68.0
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 2.2e-116 422.9 319 66.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 2.8e-116 422.5 326 63.2
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.1e-115 420.6 326 63.2
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.8e-115 419.9 324 64.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 5.4e-115 418.3 326 64.4
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.6e-114 416.8 326 64.1
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.0e-114 416.4 326 61.7
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 2.0e-114 416.4 326 62.6
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.0e-114 416.4 326 62.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.0e-113 414.1 326 63.8
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.7e-113 413.3 326 61.0
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.1e-112 410.6 324 61.1
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.5e-112 410.2 324 60.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 2.5e-112 409.5 326 61.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 4.7e-111 405.2 264 77.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.0e-110 404.1 304 62.8
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.8e-110 403.3 418 54.8
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 5.2e-110 401.7 325 60.6
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.2e-109 400.6 325 60.6
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.6e-109 399.4 295 67.1
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.3e-108 397.1 321 61.7
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.2e-108 396.4 326 60.1
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 2.2e-108 396.4 325 60.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.1e-107 392.1 375 56.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.2e-107 391.0 289 65.4
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.0e-105 387.5 259 73.7
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.3e-104 381.3 322 59.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.2e-103 378.3 324 60.5
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 8.9e-102 374.4 545 41.8
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.0e-101 373.2 324 60.5
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 8.3e-100 367.9 324 55.6
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 5.4e-99 365.2 326 56.4
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 7.3e-96 354.8 288 62.8
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 7.3e-96 354.8 684 35.1
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 6.8e-94 348.2 326 55.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 3.2e-91 339.3 273 64.5
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 6.6e-89 331.6 263 61.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.3e-84 317.4 221 69.7
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 5.4e-83 312.0 238 63.0
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 7.1e-83 311.6 306 51.6
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.7e-81 307.0 311 49.2
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 5.1e-81 305.4 309 50.8
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.7e-76 290.4 255 58.0
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.4e-75 286.6 203 70.4
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 6.0e-74 282.0 307 47.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.1e-71 273.5 222 61.7
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 3.4e-69 266.2 185 73.0
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 6.2e-55 218.8 304 39.1
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 8.8e-41 171.8 190 45.8
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 7.7e-37 158.7 96 80.2
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-33 146.7 99 70.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 9.1e-30 135.2 99 67.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.7e-29 132.1 75 80.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.2e-27 125.6 94 63.8
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.1e-26 124.0 94 63.8
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.6e-26 123.2 86 68.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 3.6e-26 123.2 121 53.7
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.8e-22 110.9 88 61.4
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.7e-20 104.4 331 26.3
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.0e-17 93.6 82 52.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 8.2e-15 85.5 66 65.2
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 8.0e-10 68.9 54 64.8
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 8.0e-10 68.9 54 64.8
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.0e-10 68.9 43 74.4
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.0e-09 68.6 54 64.8
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-08 64.3 56 55.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.4e-08 63.5 54 57.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 9.8e-08 62.0 83 42.2


User provided reference genes

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