Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 0.0e+00 2603.5 1372 100.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.3e-167 594.3 1431 36.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.5e-166 590.9 1418 35.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.7e-166 589.7 1332 36.4
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.7e-149 535.0 1433 33.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.4e-148 531.9 1453 33.9
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.1e-148 530.8 1458 34.0
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.1e-145 522.3 1334 35.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 5.5e-145 520.0 1429 33.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 9.4e-145 519.2 1333 35.6
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.7e-144 517.7 1552 32.7
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 4.7e-144 516.9 1313 33.8
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.5e-142 511.9 1457 32.5
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.8e-140 505.0 1217 35.5
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 3.1e-140 504.2 1325 34.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.5e-139 500.7 1322 34.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.3e-133 479.9 1293 33.5
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.1e-132 477.6 1428 33.1
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 5.4e-132 476.9 1435 31.6
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 4.5e-131 473.8 1460 32.7
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 8.5e-130 469.5 1460 32.4
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.8e-127 461.8 1421 32.2
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 7.7e-123 446.4 1460 32.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.3e-122 445.7 1441 31.2
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.8e-122 444.1 1468 30.9
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-121 442.6 1352 32.1
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.3e-121 441.0 1158 33.7
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.1e-120 438.3 1487 32.5
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 7.5e-118 429.9 1454 32.0
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 4.1e-116 424.1 1426 30.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 9.5e-113 412.9 1498 32.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.8e-110 403.7 1448 31.4
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 9.8e-110 402.9 1459 30.8
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 3.7e-109 401.0 1445 30.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 6.4e-109 400.2 1167 33.7
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.9e-108 398.7 1484 31.3
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 5.4e-108 397.1 1428 31.1
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.5e-107 394.4 1425 30.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.5e-107 394.4 1434 30.1
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 3.9e-106 391.0 1432 30.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.5e-105 389.0 1427 29.9
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.5e-105 389.0 1350 31.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.9e-105 388.7 1500 31.5
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.6e-104 385.6 1434 30.0
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 2.8e-104 384.8 1434 30.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.6e-104 384.4 1429 30.7
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 8.9e-103 379.8 1398 29.8
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.9e-101 374.8 1206 31.8
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.6e-96 359.0 1348 30.9
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 1.3e-93 349.4 1429 29.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 2.9e-93 348.2 1197 31.5
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.4e-92 345.9 1481 29.3
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 5.4e-92 344.0 1445 29.0
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.5e-91 341.3 1247 29.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 4.0e-87 327.8 1384 28.8
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.2e-83 316.2 1192 29.3
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.3e-82 312.8 791 35.1
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 5.6e-81 307.4 1410 28.3
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.2e-78 299.7 1499 27.6
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 8.4e-77 293.5 1402 27.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.7e-75 288.5 1252 28.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.8e-74 285.8 571 38.9
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 7.4e-73 280.4 1429 27.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.0e-70 272.3 290 50.3
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.1e-68 266.5 1321 27.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-63 249.6 1426 26.5
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.1e-63 248.4 1258 27.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.2e-62 246.5 670 32.5
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 4.9e-61 241.1 670 33.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 5.7e-57 227.6 1192 28.2
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 4.8e-56 224.6 679 34.2
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 8.2e-56 223.8 1454 27.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.1e-55 221.9 1082 28.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 1.2e-54 219.9 1187 28.1
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.5e-54 219.5 759 29.9
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 4.5e-54 218.0 683 30.0
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 5.0e-53 214.5 680 30.7
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 6.7e-50 204.1 369 37.7
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.8e-48 198.7 468 34.2
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.6e-41 175.6 647 30.1
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 7.2e-36 157.5 1291 24.8
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.7e-35 155.6 354 33.1
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.8e-34 152.9 1123 24.9
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.2e-32 146.0 760 27.5
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.2e-32 146.0 770 28.1
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.4e-31 142.5 1172 24.0
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 7.0e-31 141.0 971 26.7
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 4.5e-30 138.3 598 28.1
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.7e-29 136.3 977 27.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 4.2e-28 131.7 476 30.7
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.4e-26 126.7 1195 26.4
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.5e-25 123.2 563 29.3
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.7e-24 119.8 1155 24.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.2e-24 119.4 1119 23.1
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.8e-24 119.0 1502 24.2
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.8e-24 118.2 461 29.3
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 6.3e-24 117.9 519 29.7
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 2.4e-23 115.9 523 29.4
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.4e-23 115.9 485 29.9
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 1.6e-22 113.2 483 29.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-22 112.8 419 29.1
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 4.5e-22 111.7 533 28.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 4.5e-22 111.7 523 29.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.7e-21 109.8 400 30.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 7.2e-20 104.4 1542 21.5
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-19 102.8 448 26.6
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.7e-19 102.4 361 30.2
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 8.0e-19 100.9 352 30.1
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-18 100.5 571 28.0
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 1.4e-15 90.1 642 25.9
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.0e-15 87.8 182 35.2
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 1.2e-14 87.0 520 28.3
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 7.7e-14 84.3 526 27.8
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.5e-12 78.2 376 29.3
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.0e-10 73.9 131 35.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.0e-10 73.9 1490 23.2
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-10 73.2 200 33.5
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-09 68.9 174 33.3
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 9.8e-09 67.4 356 26.4
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.3e-08 67.0 356 26.1
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.1e-07 62.0 148 29.7
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 9.2e-07 60.8 132 31.8
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 2.7e-06 59.3 89 39.3
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 2.7e-06 59.3 123 30.9
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 7.8e-06 57.8 358 27.1
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 7.8e-06 57.8 330 25.5


User provided reference genes

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