Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02755 Eucalyptus grandis HOM05D000642 ORTHO05D000483 3.3e-62 241.5 120 100.0
Eucgr.L02546 Eucalyptus grandis HOM05D000642 ORTHO05D000483 4.0e-23 111.7 58 93.1
Eucgr.G00149 Eucalyptus grandis HOM05D035146 ORTHO05D000483 9.4e-17 90.5 51 84.3
Eucgr.B01067 Eucalyptus grandis HOM05D035146 ORTHO05D000483 2.7e-16 89.0 51 82.4
PGR042G0701 Punica granatum HOM05D000642 ORTHO05D000483 6.3e-13 77.8 99 43.4
Eucgr.H02867 Eucalyptus grandis HOM05D000642 ORTHO05D000483 1.4e-12 76.6 45 80.0
Psat7g068400 Pisum sativum HOM05D000642 ORTHO05D000483 2.0e-11 72.8 106 40.6
vmacro11951 Vaccinium macrocarpon HOM05D000642 ORTHO05D000483 2.0e-11 72.8 76 48.7
Manes.17G059500 Manihot esculenta HOM05D000642 ORTHO05D000483 2.7e-11 72.4 88 43.2
Manes.16G042600 Manihot esculenta HOM05D000642 ORTHO05D000483 5.9e-11 71.2 85 43.5
Ciclev10015165m.g Citrus clementina HOM05D000642 ORTHO05D000483 1.0e-10 70.5 76 46.1
Glyma.05G161200 Glycine max HOM05D000642 ORTHO05D000483 1.3e-10 70.1 108 38.0
Medtr8g087400 Medicago truncatula HOM05D000642 ORTHO05D000483 2.9e-10 68.9 106 38.7
Lalb_Chr13g0295301 Lupinus albus HOM05D000642 ORTHO05D000483 3.8e-10 68.6 111 35.1
TPR.G6725 Trifolium pratense HOM05D000642 ORTHO05D000483 3.8e-10 68.6 106 38.7
TWI73G0697 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 3.8e-10 68.6 58 56.9
CSS0019511 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 6.6e-10 67.8 58 55.2
CSS0043174 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 6.6e-10 67.8 58 55.2
Oeu031019.1 Olea europaea HOM05D000642 ORTHO05D000483 6.6e-10 67.8 72 47.2
GSVIVG01021261001 Vitis vinifera HOM05D000642 ORTHO05D000483 1.1e-09 67.0 70 50.0
Prupe.4G067400 Prunus persica HOM05D000642 ORTHO05D000483 1.5e-09 66.6 92 41.3
RcHm_v2.0_Chr5g0011811 Rosa chinensis HOM05D000642 ORTHO05D000483 1.5e-09 66.6 108 36.1
Cpa.g.sc7.118 Carica papaya HOM05D000642 ORTHO05D000483 1.9e-09 66.2 54 57.4
QL05p049803 Quercus lobata HOM05D000642 ORTHO05D000483 1.9e-09 66.2 53 54.7
Atru.chr10.1564 Acer truncatum HOM05D000642 ORTHO05D000483 2.5e-09 65.9 108 35.2
FAN21G1904 Fragaria x ananassa HOM05D000642 ORTHO05D000483 2.5e-09 65.9 103 37.9
FAN25G3857 Fragaria x ananassa HOM05D000642 ORTHO05D000483 2.5e-09 65.9 103 37.9
Haze_06176 Corylus avellana HOM05D000642 ORTHO05D000483 3.3e-09 65.5 77 44.2
FAN16G0689 Fragaria x ananassa HOM05D000642 ORTHO05D000483 3.3e-09 65.5 103 37.9
Glyma.08G118600 Glycine max HOM05D000642 ORTHO05D000483 3.3e-09 65.5 108 36.1
Phvul.002G241300 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 3.3e-09 65.5 110 36.4
VMungo0251G3757 Vigna mungo HOM05D000642 ORTHO05D000483 3.3e-09 65.5 110 36.4
Dinv12747 Davidia involucrata HOM05D000642 ORTHO05D000483 5.5e-09 64.7 136 32.4
MD00G1008600 Malus domestica HOM05D000642 ORTHO05D000483 5.5e-09 64.7 108 37.0
TWI53G0667 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 5.5e-09 64.7 58 53.4
Cfa000653 Carpinus fangiana HOM05D000642 ORTHO05D000483 7.2e-09 64.3 77 44.2
FvH4_3g07250 Fragaria vesca HOM05D000642 ORTHO05D000483 7.2e-09 64.3 102 37.3
Lj4g0006637 Lotus japonicus HOM05D000642 ORTHO05D000483 7.2e-09 64.3 108 36.1
FAN11G1517 Fragaria x ananassa HOM05D000642 ORTHO05D000483 9.5e-09 63.9 103 36.9
MD10G1275000 Malus domestica HOM05D000642 ORTHO05D000483 1.2e-08 63.5 108 37.0
Ca_17895_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 1.6e-08 63.2 99 35.4
Sc16g0007680 Simmondsia chinensis HOM05D000642 ORTHO05D000483 2.8e-08 62.4 86 39.5
CANSAT35G0085 Cannabis sativa HOM05D000642 ORTHO05D000483 3.6e-08 62.0 82 40.2
Rhsim06G0209900 Rhododendron simsii HOM05D000642 ORTHO05D000483 4.7e-08 61.6 74 44.6
PGSC0003DMG400028419 Solanum tuberosum HOM05D000642 ORTHO05D000483 4.7e-08 61.6 59 47.5
Ca_26982_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 6.1e-08 61.2 59 45.8
COL.COLO4_31225 Corchorus olitorius HOM05D000642 ORTHO05D000483 6.1e-08 61.2 80 42.5
Potri.011G071000 Populus trichocarpa HOM05D000642 ORTHO05D000483 6.1e-08 61.2 100 40.0
Solyc02g072140.1 Solanum lycopersicum HOM05D000642 ORTHO05D000483 6.1e-08 61.2 59 47.5
Sopen02g021100 Solanum pennellii HOM05D000642 ORTHO05D000483 6.1e-08 61.2 59 47.5
MSTRG.14968 Avicennia marina HOM05D000642 ORTHO05D000483 8.0e-08 60.8 58 44.8
CAN.G411.48 Capsicum annuum HOM05D000642 ORTHO05D000483 8.0e-08 60.8 59 47.5
Gohir.A05G153200 Gossypium hirsutum HOM05D000642 ORTHO05D000483 8.0e-08 60.8 96 38.5
Lalb_Chr07g0186311 Lupinus albus HOM05D000642 ORTHO05D000483 8.0e-08 60.8 52 51.9
Oeu061363.1 Olea europaea HOM05D000642 ORTHO05D000483 8.0e-08 60.8 64 46.9
Dinv32335 Davidia involucrata HOM05D000642 ORTHO05D000483 1.0e-07 60.5 60 50.0
Gorai.009G160300 Gossypium raimondii HOM05D000642 ORTHO05D000483 1.0e-07 60.5 96 38.5
TAR626G1936 Trochodendron aralioides HOM05D000642 ORTHO05D000483 1.0e-07 60.5 58 50.0
Ah.09g233230 Amaranthus hybridus HOM05D000642 ORTHO05D000483 1.4e-07 60.1 68 41.2
CiPaw.10G061600 Carya illinoinensis HOM05D000642 ORTHO05D000483 1.4e-07 60.1 53 50.9
Sabra04G0040900 Salix brachista HOM05D000642 ORTHO05D000483 1.4e-07 60.1 100 39.0
CSS0026203 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 1.8e-07 59.7 62 46.8
Lj3g0017813 Lotus japonicus HOM05D000642 ORTHO05D000483 1.8e-07 59.7 58 44.8
GSVIVG01014172001 Vitis vinifera HOM05D000642 ORTHO05D000483 1.8e-07 59.7 93 35.5
Gohir.D05G155800 Gossypium hirsutum HOM05D000642 ORTHO05D000483 2.3e-07 59.3 96 37.5
Sabra11G0058700 Salix brachista HOM05D000642 ORTHO05D000483 2.3e-07 59.3 100 39.0
Actinidia12587 Actinidia chinensis HOM05D000642 ORTHO05D000483 3.0e-07 58.9 58 50.0
arahy.Tifrunner.gnm1.ann1.6GI2WH Arachis hypogaea HOM05D000642 ORTHO05D000483 3.0e-07 58.9 130 33.1
Nitab4.5_0012630g0010 Nicotiana tabacum HOM05D000642 ORTHO05D000483 4.0e-07 58.5 59 45.8
SalBow7G0975 Salvia bowleyana HOM05D000642 ORTHO05D000483 4.0e-07 58.5 86 36.0
AUR62039480 Chenopodium quinoa HOM05D000642 ORTHO05D000483 5.2e-07 58.2 78 39.7
Gorai.010G241100 Gossypium raimondii HOM05D000642 ORTHO05D000483 5.2e-07 58.2 57 45.6
Phvul.005G081200 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 5.2e-07 58.2 54 46.3
Potri.004G061600 Populus trichocarpa HOM05D000642 ORTHO05D000483 5.2e-07 58.2 100 39.0
Atru.chr2.2069 Acer truncatum HOM05D000642 ORTHO05D000483 6.8e-07 57.8 109 32.1
MSTRG.14238 Avicennia marina HOM05D000642 ORTHO05D000483 6.8e-07 57.8 56 51.8
MELO3C025651.2 Cucumis melo HOM05D000642 ORTHO05D000483 6.8e-07 57.8 78 41.0
Nitab4.5_0000437g0020 Nicotiana tabacum HOM05D000642 ORTHO05D000483 6.8e-07 57.8 59 45.8
Sabra11G0055600 Salix brachista HOM05D000642 ORTHO05D000483 6.8e-07 57.8 100 38.0
CARHR028620 Cardamine hirsuta HOM05D000642 ORTHO05D000483 8.9e-07 57.4 105 38.1
AUR62019593 Chenopodium quinoa HOM05D000642 ORTHO05D000483 8.9e-07 57.4 58 44.8
Ca_03956_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 8.9e-07 57.4 103 35.0
Duzib192G0846 Durio zibethinus HOM05D000642 ORTHO05D000483 8.9e-07 57.4 96 35.4
Oeu059256.1 Olea europaea HOM05D000642 ORTHO05D000483 8.9e-07 57.4 58 46.6
Thecc.06G165000 Theobroma cacao HOM05D000642 ORTHO05D000483 8.9e-07 57.4 62 45.2
CiPaw.09G072900 Carya illinoinensis HOM05D000642 ORTHO05D000483 1.2e-06 57.0 58 46.6
AUR62041818 Chenopodium quinoa HOM05D000642 ORTHO05D000483 1.2e-06 57.0 78 38.5
MELO3C016124.2 Cucumis melo HOM05D000642 ORTHO05D000483 1.2e-06 57.0 55 49.1
DCAR_021028 Daucus carota HOM05D000642 ORTHO05D000483 1.2e-06 57.0 62 43.5
Glyma.13G268800 Glycine max HOM05D000642 ORTHO05D000483 1.2e-06 57.0 69 37.7
Ah.14g086970 Amaranthus hybridus HOM05D000642 ORTHO05D000483 1.5e-06 56.6 57 40.4
Sc03g0010590 Simmondsia chinensis HOM05D000642 ORTHO05D000483 1.5e-06 56.6 57 45.6
vmacro09488 Vaccinium macrocarpon HOM05D000642 ORTHO05D000483 1.5e-06 56.6 64 45.3
Ah.04g164190 Amaranthus hybridus HOM05D000642 ORTHO05D000483 2.0e-06 56.2 58 43.1
AUR62037561 Chenopodium quinoa HOM05D000642 ORTHO05D000483 2.0e-06 56.2 58 43.1
CsaV3_4G032980 Cucumis sativus L. HOM05D000642 ORTHO05D000483 2.0e-06 56.2 68 44.1
Migut.M00707 Erythranthe guttata HOM05D000642 ORTHO05D000483 2.0e-06 56.2 51 51.0
unitig_0.g2037 Utricularia gibba HOM05D000642 ORTHO05D000483 2.0e-06 56.2 59 44.1
VMungo1080G1679 Vigna mungo HOM05D000642 ORTHO05D000483 2.0e-06 56.2 69 34.8
ClCG01G023930 Citrullus lanatus HOM05D000642 ORTHO05D000483 2.6e-06 55.8 110 32.7
Gohir.A06G199400 Gossypium hirsutum HOM05D000642 ORTHO05D000483 2.6e-06 55.8 57 43.9
Oeu040925.1 Olea europaea HOM05D000642 ORTHO05D000483 2.6e-06 55.8 67 38.8
arahy.Tifrunner.gnm1.ann1.4V96S8 Arachis hypogaea HOM05D000642 ORTHO05D000483 3.4e-06 55.5 125 34.4
arahy.Tifrunner.gnm1.ann1.EBD336 Arachis hypogaea HOM05D000642 ORTHO05D000483 3.4e-06 55.5 125 34.4
EL10Ac4g08369 Beta vulgaris HOM05D000642 ORTHO05D000483 3.4e-06 55.5 58 43.1
Glyma.12G230800 Glycine max HOM05D000642 ORTHO05D000483 3.4e-06 55.5 69 37.7
Peaxi162Scf00111g00148 Petunia axillaris HOM05D000642 ORTHO05D000483 3.4e-06 55.5 58 44.8
Psat5g235600 Pisum sativum HOM05D000642 ORTHO05D000483 3.4e-06 55.5 55 47.3
CsaV3_6G051070 Cucumis sativus L. HOM05D000642 ORTHO05D000483 4.4e-06 55.1 110 32.7
Gohir.D06G206700 Gossypium hirsutum HOM05D000642 ORTHO05D000483 4.4e-06 55.1 57 42.1
MBI07_g00457_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 4.4e-06 55.1 59 45.8
Hund10482 Selenicereus undatus HOM05D000642 ORTHO05D000483 4.4e-06 55.1 58 43.1
SGA_v2.0_scaffold106G30601 Striga asiatica HOM05D000642 ORTHO05D000483 4.4e-06 55.1 60 41.7
Duzib235G1286 Durio zibethinus HOM05D000642 ORTHO05D000483 5.7e-06 54.7 62 43.5
Hma1.2p1_0799F.1_g219920 Hydrangea macrophylla HOM05D000642 ORTHO05D000483 5.7e-06 54.7 61 39.3
Nitab4.5_0000788g0060 Nicotiana tabacum HOM05D000642 ORTHO05D000483 5.7e-06 54.7 57 43.9
Sabra11G0095900 Salix brachista HOM05D000642 ORTHO05D000483 5.7e-06 54.7 58 44.8
Sc05g0006850 Simmondsia chinensis HOM05D000642 ORTHO05D000483 5.7e-06 54.7 65 38.5
MSTRG.7432 Avicennia marina HOM05D000642 ORTHO05D000483 7.5e-06 54.3 56 44.6
CiPaw.11G159000 Carya illinoinensis HOM05D000642 ORTHO05D000483 7.5e-06 54.3 58 41.4
Cc02_g15640 Coffea canephora HOM05D000642 ORTHO05D000483 7.5e-06 54.3 58 43.1
Rhsim04G0027100 Rhododendron simsii HOM05D000642 ORTHO05D000483 7.5e-06 54.3 68 39.7
CsaV3_4G008120 Cucumis sativus L. HOM05D000642 ORTHO05D000483 9.8e-06 53.9 55 45.5
Migut.H02004 Erythranthe guttata HOM05D000642 ORTHO05D000483 9.8e-06 53.9 93 36.6
Nitab4.5_0003166g0010 Nicotiana tabacum HOM05D000642 ORTHO05D000483 9.8e-06 53.9 64 40.6
Nitab4.5_0006663g0020 Nicotiana tabacum HOM05D000642 ORTHO05D000483 9.8e-06 53.9 56 44.6
Oeu060180.1 Olea europaea HOM05D000642 ORTHO05D000483 9.8e-06 53.9 57 45.6
SalBow8G0554 Salvia bowleyana HOM05D000642 ORTHO05D000483 9.8e-06 53.9 101 33.7
TPR.G16068 Trifolium pratense HOM05D000642 ORTHO05D000483 9.8e-06 53.9 55 45.5


User provided reference genes

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