Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.9e-211 738.8 352 100.0
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 7.0e-161 570.9 351 73.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 5.5e-158 561.2 349 72.8
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 5.5e-158 561.2 351 73.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.2e-157 560.1 348 74.4
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 6.1e-157 557.8 349 73.9
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 8.0e-157 557.4 351 72.4
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 8.0e-157 557.4 352 71.6
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.0e-156 557.0 349 72.8
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.0e-156 557.0 346 73.7
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 3.0e-156 555.4 346 74.3
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 4.0e-156 555.1 349 73.4
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 6.8e-156 554.3 351 72.6
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 2.0e-155 552.7 352 71.9
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 5.7e-155 551.2 351 71.8
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 9.8e-155 550.4 350 71.7
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 9.8e-155 550.4 350 71.1
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 2.8e-154 548.9 347 73.2
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 3.7e-154 548.5 351 70.9
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 6.3e-154 547.7 347 72.0
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.4e-153 546.6 349 71.3
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-153 546.6 347 72.3
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.4e-153 546.6 350 70.9
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 5.4e-153 544.7 350 70.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 2.0e-152 542.7 347 70.0
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 3.5e-152 542.0 348 69.8
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 3.5e-152 542.0 349 70.5
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 5.9e-152 541.2 347 70.0
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 1.0e-151 540.4 347 72.0
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.7e-151 539.7 347 71.5
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 2.3e-151 539.3 348 70.1
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 2.3e-151 539.3 349 69.6
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 2.3e-151 539.3 347 72.3
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 2.3e-151 539.3 349 72.5
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 3.8e-151 538.5 343 73.2
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.0e-151 538.1 350 70.3
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 5.0e-151 538.1 343 72.0
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 8.6e-151 537.3 348 70.7
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 8.6e-151 537.3 347 70.0
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.5e-150 536.6 347 70.9
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-150 536.2 350 69.7
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.9e-150 536.2 351 69.5
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-150 535.4 350 70.0
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-150 535.4 350 69.7
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-150 535.4 350 70.0
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 4.2e-150 535.0 347 71.8
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.2e-150 534.3 350 70.0
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 9.5e-150 533.9 348 70.1
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.2e-149 533.5 352 69.6
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.1e-149 532.7 349 70.8
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 2.1e-149 532.7 350 69.7
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-149 532.3 350 69.7
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-149 532.3 350 69.1
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-149 532.3 350 69.7
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-149 532.3 350 69.1
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 6.1e-149 531.2 348 72.4
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 8.0e-149 530.8 349 68.8
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-148 530.4 350 69.4
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-148 530.4 350 68.9
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 1.0e-148 530.4 347 70.3
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 6.8e-148 527.7 347 69.2
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 8.9e-148 527.3 349 69.3
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.2e-147 526.9 348 70.7
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.2e-147 526.9 350 68.9
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.5e-147 526.6 351 68.7
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 9.8e-147 523.9 345 70.1
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 9.8e-147 523.9 333 70.6
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 1.3e-146 523.5 348 69.8
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.3e-146 523.5 349 69.1
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.2e-146 522.7 348 68.7
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 4.9e-146 521.5 349 69.9
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 4.9e-146 521.5 348 69.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 4.9e-146 521.5 347 68.3
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.8e-145 519.6 352 68.8
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 4.1e-145 518.5 349 69.1
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 4.1e-145 518.5 350 68.0
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 4.1e-145 518.5 350 68.6
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 4.1e-145 518.5 350 67.1
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 1.6e-144 516.5 302 77.8
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 7.8e-144 514.2 350 68.3
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.3e-143 513.5 351 67.2
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 6.6e-143 511.1 352 67.0
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 4.9e-138 495.0 347 64.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 8.3e-138 494.2 348 64.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 6.2e-133 478.0 348 64.7
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 5.2e-132 474.9 346 62.7
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 2.4e-129 466.1 344 62.2
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 9.5e-126 454.1 348 61.8
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 6.2e-125 451.4 344 58.7
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 8.1e-125 451.1 295 71.2
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 1.1e-124 450.7 347 61.1
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 3.5e-120 435.6 351 62.1
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.1e-116 422.5 342 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 4.0e-116 422.2 327 59.6
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 2.6e-107 392.9 326 58.3
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 4.5e-99 365.5 305 59.0
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.8e-95 353.6 295 58.6
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.7e-90 337.0 335 50.4
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.0e-87 326.2 210 70.0
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 7.4e-78 295.0 360 44.2
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 6.9e-76 288.5 348 44.0
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 3.9e-63 246.1 163 67.5
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.3e-61 241.1 375 38.1
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 9.7e-54 214.9 275 42.2
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 3.5e-51 206.5 130 74.6
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 8.0e-40 168.7 324 32.4
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 8.0e-32 142.1 307 31.9
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.2e-31 139.4 93 72.0
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 2.3e-23 114.0 302 30.1
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 7.5e-22 109.0 67 65.7
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 3.5e-19 100.1 70 64.3
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 2.3e-15 87.4 59 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3091 Anthoceros agrestis HOM05D003484 ORTHO05D004152 6.2e-08 62.8 234 25.6
Atru.chr3.681 Acer truncatum HOM05D003484 ORTHO05D004152 5.8e-06 56.2 238 23.9
GSVIVG01009775001 Vitis vinifera HOM05D003484 ORTHO05D004152 9.9e-06 55.5 232 21.6


User provided reference genes

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