Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.1e-80 303.5 189 100.0
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.1e-34 149.8 130 60.0
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 2.3e-33 146.4 185 47.6
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 3.3e-32 142.5 185 49.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 7.3e-32 141.4 79 86.1
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.6e-32 141.0 137 58.4
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.6e-32 141.0 137 58.4
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.3e-31 140.6 182 48.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.6e-31 140.2 137 57.7
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.6e-31 140.2 78 84.6
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.1e-31 139.8 124 58.1
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.1e-31 139.8 78 83.3
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.8e-31 139.4 80 82.5
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.6e-31 139.0 183 48.1
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 4.8e-31 138.7 78 83.3
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 6.2e-31 138.3 79 83.5
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 6.2e-31 138.3 165 61.2
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 8.1e-31 137.9 78 83.3
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.1e-30 137.5 78 84.6
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.4e-30 137.1 82 78.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.4e-30 137.1 80 81.2
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.8e-30 136.7 78 83.3
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.8e-30 136.7 78 83.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 6.9e-30 134.8 79 78.5
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 6.9e-30 134.8 79 81.0
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 9.0e-30 134.4 186 46.8
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 9.0e-30 134.4 79 81.0
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.2e-29 134.0 80 77.5
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 1.2e-29 134.0 186 47.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 1.2e-29 134.0 80 75.0
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.5e-29 133.7 187 46.5
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.6e-29 132.9 77 80.5
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 2.6e-29 132.9 79 78.5
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.6e-29 132.9 77 83.1
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.6e-29 132.9 78 79.5
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 3.4e-29 132.5 130 55.4
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.4e-29 132.5 130 60.0
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 4.5e-29 132.1 77 83.1
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 5.8e-29 131.7 76 82.9
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 7.6e-29 131.3 80 72.5
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 9.9e-29 131.0 80 76.2
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.3e-28 130.6 187 44.9
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-28 130.6 187 44.9
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.7e-28 130.2 81 74.1
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 2.2e-28 129.8 195 47.2
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.2e-28 129.8 79 77.2
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.2e-28 129.8 79 77.2
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.2e-28 129.8 189 46.0
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.9e-28 129.4 76 82.9
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.9e-28 129.4 78 78.2
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.8e-28 129.0 79 75.9
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.9e-28 128.6 191 54.5
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 6.4e-28 128.3 78 79.5
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 8.4e-28 127.9 181 45.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.4e-28 127.9 72 84.7
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 1.1e-27 127.5 186 45.7
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-27 127.5 80 76.2
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-27 127.1 181 51.4
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.4e-27 127.1 72 84.7
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-27 126.7 162 45.1
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.9e-27 126.7 162 45.1
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.4e-27 126.3 185 54.1
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.4e-27 126.3 158 51.3
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 4.2e-27 125.6 80 72.5
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 9.3e-27 124.4 169 44.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 9.3e-27 124.4 80 77.5
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 9.3e-27 124.4 169 45.6
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.2e-26 124.0 79 75.9
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.2e-26 124.0 186 48.9
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.6e-26 123.6 79 73.4
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.6e-26 123.6 82 67.1
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.6e-26 123.6 189 50.8
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.5e-26 122.5 79 73.4
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.6e-26 122.1 173 52.0
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 4.6e-26 122.1 169 44.4
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.6e-26 122.1 80 72.5
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 6.0e-26 121.7 80 72.5
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 6.0e-26 121.7 80 70.0
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 7.9e-26 121.3 171 48.5
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.0e-25 120.9 80 72.5
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.8e-25 120.2 78 69.2
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.8e-25 120.2 82 70.7
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.8e-25 120.2 79 72.2
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.3e-25 119.8 80 71.2
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 2.3e-25 119.8 80 72.5
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.3e-25 119.8 181 43.1
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 3.9e-25 119.0 80 73.8
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.5e-24 116.3 122 48.4
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 7.4e-24 114.8 76 67.1
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 7.4e-24 114.8 80 72.5
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.1e-23 113.2 80 70.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.8e-23 112.8 182 44.0
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.8e-23 112.8 80 68.8
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 4.8e-23 112.1 70 77.1
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 4.8e-23 112.1 80 68.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 4.8e-23 112.1 80 68.8
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 6.2e-23 111.7 80 67.5
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.1e-22 110.9 163 42.9
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.1e-22 110.9 82 69.5
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.4e-22 109.8 80 68.8
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 3.1e-22 109.4 80 63.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.0e-22 109.0 68 73.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 6.9e-22 108.2 189 39.2
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 6.9e-22 108.2 80 67.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 6.9e-22 108.2 82 65.9
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 9.0e-22 107.8 80 65.0
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.2e-21 107.5 79 62.0
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-21 107.1 66 74.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.5e-21 107.1 66 74.2
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.5e-21 107.1 79 60.8
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.5e-21 107.1 79 68.4
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 2.6e-21 106.3 79 65.8
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 5.8e-21 105.1 79 64.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 5.8e-21 105.1 79 63.3
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 7.6e-21 104.8 79 60.8
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 7.6e-21 104.8 80 60.0
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 9.9e-21 104.4 80 60.0
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 9.9e-21 104.4 79 64.6
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.3e-20 104.0 84 60.7
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.7e-20 103.6 82 62.2
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 2.9e-20 102.8 82 59.8
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.9e-20 102.8 79 64.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.9e-20 102.8 80 65.0
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 3.8e-20 102.4 79 59.5
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 4.9e-20 102.1 82 59.8
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 6.4e-20 101.7 133 45.9
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 4.2e-19 99.0 134 44.0
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 9.3e-19 97.8 77 57.1
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 2.1e-18 96.7 74 68.9
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 2.1e-18 96.7 74 68.9
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 2.7e-18 96.3 82 58.5
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 6.0e-18 95.1 115 47.0
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.8e-17 93.6 77 57.1
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 3.0e-17 92.8 76 52.6
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.6e-15 87.0 75 56.0
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 3.7e-15 85.9 66 65.2
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 4.8e-15 85.5 63 65.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.1e-14 84.3 74 56.8
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.4e-14 83.2 189 34.4
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.4e-14 83.2 189 34.4
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.0e-13 80.1 62 61.3
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.6e-13 79.7 77 51.9
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.8e-09 67.0 77 49.4
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 1.1e-08 64.3 80 46.2
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.6e-07 60.5 35 82.9
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.9e-06 55.1 34 67.6


User provided reference genes

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