Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.3e-246 855.9 418 100.0
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.0e-240 834.3 418 97.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.2e-217 756.9 418 85.9
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.6e-204 716.1 416 82.0
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.4e-197 690.3 418 78.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.7e-193 679.5 419 77.6
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.6e-188 662.9 418 74.9
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 2.7e-183 645.6 418 73.7
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 2.9e-182 642.1 417 72.9
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.6e-180 636.3 418 71.5
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.7e-180 634.8 418 72.5
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 6.1e-180 634.4 419 71.6
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 4.0e-179 631.7 419 72.6
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 6.8e-179 630.9 418 72.0
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 8.8e-179 630.6 416 71.9
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 2.0e-178 629.4 423 72.3
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 5.7e-178 627.9 418 70.1
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 7.5e-178 627.5 418 72.0
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 2.8e-177 625.5 418 71.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 3.7e-177 625.2 418 70.1
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 1.1e-176 623.6 418 70.1
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.4e-176 623.2 417 70.7
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 3.1e-176 622.1 418 70.3
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 3.1e-176 622.1 419 70.6
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 7.0e-176 620.9 417 71.0
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.2e-175 620.2 418 70.3
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 1.6e-175 619.8 418 71.8
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.0e-175 619.4 421 69.8
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 4.5e-175 618.2 418 68.9
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 5.9e-175 617.8 419 69.7
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 5.9e-175 617.8 417 70.7
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 5.9e-175 617.8 418 69.4
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 7.7e-175 617.5 419 68.7
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 1.0e-174 617.1 416 71.2
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.3e-174 616.7 418 70.1
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.7e-174 616.3 418 70.1
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 2.9e-174 615.5 419 69.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.9e-174 615.5 419 67.8
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 2.9e-174 615.5 418 69.1
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.8e-174 615.1 418 70.1
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.8e-174 615.1 428 69.9
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 6.5e-174 614.4 419 69.7
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 8.5e-174 614.0 417 70.5
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 2.5e-173 612.5 419 69.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.5e-173 612.5 419 69.2
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-173 612.5 419 69.2
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.5e-173 612.5 419 69.5
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 2.5e-173 612.5 419 69.5
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 4.2e-173 611.7 419 70.2
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 5.5e-173 611.3 418 70.3
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 7.2e-173 610.9 418 69.1
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.6e-172 609.8 408 70.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 8.0e-172 607.4 419 69.9
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 8.0e-172 607.4 419 70.4
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-171 606.7 419 69.5
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-171 606.7 419 69.7
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.4e-171 606.7 419 69.5
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.4e-171 606.7 414 68.8
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.8e-171 606.3 420 70.2
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.8e-171 606.3 439 67.0
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.0e-171 605.5 418 70.8
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 4.0e-171 605.1 419 68.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 5.2e-171 604.7 419 69.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 5.2e-171 604.7 419 69.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 8.8e-171 604.0 418 67.9
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.2e-170 603.6 416 68.5
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-170 603.6 419 69.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.2e-170 603.6 419 67.8
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.2e-170 603.6 418 67.0
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 1.5e-170 603.2 423 70.0
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.5e-170 603.2 420 67.6
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.5e-170 603.2 419 68.3
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.4e-170 602.1 419 68.0
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 5.7e-170 601.3 419 69.7
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 7.5e-170 600.9 418 68.2
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.7e-169 599.7 420 67.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 6.3e-169 597.8 419 68.7
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.8e-168 596.3 419 67.1
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 3.1e-168 595.5 418 67.2
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 7.0e-168 594.3 418 69.4
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.2e-167 593.6 418 66.0
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.3e-166 590.1 423 65.5
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.7e-166 589.7 418 69.1
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.9e-166 589.0 418 66.5
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 5.0e-166 588.2 418 68.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 1.5e-165 586.6 421 66.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.9e-165 586.3 418 65.3
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.6e-165 584.7 418 68.9
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.5e-165 583.9 417 64.3
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.6e-162 575.9 418 64.8
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 2.2e-161 572.8 420 65.5
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-161 572.8 419 67.1
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-161 572.8 419 67.1
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.2e-161 572.8 421 66.3
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 8.3e-161 570.9 419 64.2
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.5e-157 560.1 423 63.4
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 2.3e-155 552.7 418 62.4
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 5.2e-155 551.6 419 64.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 8.9e-155 550.8 423 63.8
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 7.0e-152 541.2 418 60.5
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 9.2e-152 540.8 402 64.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.6e-151 540.0 419 61.1
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.6e-151 538.5 418 60.0
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 4.6e-151 538.5 419 60.6
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.0e-150 535.8 418 62.2
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.8e-147 524.6 420 60.5
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.8e-146 521.5 421 58.9
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-145 520.4 422 62.8
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 5.4e-144 515.0 419 59.2
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 9.2e-144 514.2 417 60.4
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.1e-143 513.1 421 59.9
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 3.3e-141 505.8 423 57.0
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 6.8e-139 498.0 423 56.5
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 2.0e-138 496.5 420 55.2
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 2.0e-138 496.5 361 66.8
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.6e-138 496.1 420 56.7
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.4e-138 495.4 451 52.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.8e-130 468.4 401 55.4
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 3.4e-122 442.6 408 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.9e-120 436.8 442 50.5
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 4.8e-116 422.2 315 66.0
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.3e-113 414.1 418 50.5
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 7.9e-111 404.8 417 48.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 8.2e-108 394.8 415 46.7
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.5e-106 390.6 268 67.5
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.0e-106 390.2 302 62.6
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.3e-101 372.9 351 50.7
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.3e-101 372.5 418 48.3
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.7e-100 369.4 418 48.3
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.0e-89 334.7 416 42.3
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.7e-84 317.4 239 64.0
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 8.2e-84 315.1 245 62.4
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.0e-81 308.1 230 66.1
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-80 304.7 296 51.0
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 3.8e-57 226.5 145 71.7
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 8.9e-54 215.3 157 66.2
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.3e-49 200.7 323 37.8
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.8e-45 186.0 145 60.7
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-43 179.9 151 60.3
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.0e-41 173.7 134 60.4
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 2.5e-40 170.6 116 68.1
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.6e-40 169.5 215 44.7
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.6e-39 167.9 159 57.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.4e-35 152.9 412 28.2
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-30 137.9 146 54.8
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 4.4e-29 133.3 133 53.4
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.2e-22 109.8 80 66.2
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 7.6e-21 105.9 78 65.4
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-20 104.8 80 65.0
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 3.5e-18 97.1 71 66.2
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-17 94.7 95 56.8
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.5e-16 91.7 93 47.3
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-15 87.8 88 54.5
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 2.6e-13 80.9 60 63.3
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.6e-13 79.3 68 45.6
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.9e-12 77.4 96 43.8
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-10 71.2 60 60.0
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 2.3e-09 67.8 106 37.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.6e-09 66.2 63 52.4
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 5.6e-08 63.2 61 57.4
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 7.3e-08 62.8 59 61.0
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 7.3e-08 62.8 39 69.2
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.6e-07 60.5 72 37.5
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-06 58.2 39 64.1


User provided reference genes

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