Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-260 901.4 441 100.0
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-207 725.3 438 81.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.9e-204 714.5 416 82.0
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 9.2e-203 710.3 437 80.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.2e-202 709.9 416 81.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.4e-198 695.7 438 78.1
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 1.0e-172 610.5 433 69.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 8.7e-169 597.4 435 68.3
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 1.9e-168 596.3 419 69.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.7e-167 592.0 436 67.4
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 8.2e-167 590.9 420 67.1
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 5.3e-166 588.2 419 68.3
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 9.0e-166 587.4 426 68.5
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 2.0e-165 586.3 433 66.7
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.6e-165 585.9 430 67.2
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 3.4e-165 585.5 421 68.2
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.4e-165 585.5 435 68.5
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.5e-165 585.1 420 67.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 5.9e-165 584.7 436 67.9
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.0e-164 583.9 418 67.5
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.7e-164 583.2 419 66.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 8.5e-164 580.9 426 67.6
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 8.5e-164 580.9 419 67.5
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.4e-163 580.1 440 65.7
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.2e-163 578.6 427 65.6
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 5.5e-163 578.2 425 64.2
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 7.2e-163 577.8 433 66.3
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.2e-162 577.0 425 64.7
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.6e-162 575.1 435 65.5
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 6.1e-162 574.7 435 65.5
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 7.9e-162 574.3 427 66.5
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 7.9e-162 574.3 420 66.7
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 1.0e-161 573.9 433 64.4
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.4e-161 573.5 437 64.5
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.4e-161 573.5 434 65.2
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 2.3e-161 572.8 410 67.6
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 3.0e-161 572.4 436 65.8
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 5.1e-161 571.6 445 64.9
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.1e-160 570.5 430 65.6
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.1e-160 570.5 435 65.1
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.1e-160 570.5 420 66.9
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.5e-160 570.1 419 65.9
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.0e-160 569.7 417 65.7
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 2.5e-160 569.3 440 65.0
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 7.4e-160 567.8 427 65.1
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.3e-159 567.0 437 64.8
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.7e-159 566.6 426 66.4
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 3.7e-159 565.5 429 65.0
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-159 564.7 417 65.5
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 8.2e-159 564.3 417 65.5
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 8.2e-159 564.3 422 68.0
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-158 563.9 417 65.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.4e-158 563.5 429 64.6
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.4e-158 563.5 418 65.6
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.4e-158 562.8 429 64.1
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.4e-158 562.8 414 65.2
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 2.4e-158 562.8 430 63.7
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 3.1e-158 562.4 424 64.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 3.1e-158 562.4 427 64.9
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 3.1e-158 562.4 427 64.9
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 3.1e-158 562.4 418 64.8
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 4.1e-158 562.0 429 64.3
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.1e-158 562.0 427 63.9
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.1e-158 562.0 426 66.9
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 4.1e-158 562.0 431 64.3
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 5.3e-158 561.6 424 65.1
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 6.9e-158 561.2 424 64.6
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 6.9e-158 561.2 427 64.6
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.9e-158 561.2 429 64.3
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 6.9e-158 561.2 429 65.0
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 6.9e-158 561.2 429 64.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 9.1e-158 560.8 437 64.3
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-157 560.5 417 65.5
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 1.2e-157 560.5 417 65.5
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.2e-157 560.5 432 63.7
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.5e-157 560.1 435 65.1
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 2.6e-157 559.3 429 64.3
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.4e-157 558.9 433 63.3
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.2e-156 556.2 428 63.8
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 6.5e-156 554.7 423 64.3
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 6.5e-156 554.7 421 64.8
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 2.5e-155 552.7 416 65.9
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 4.2e-155 552.0 430 63.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 9.4e-155 550.8 433 62.4
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.6e-154 548.9 435 61.1
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.4e-153 547.0 416 66.1
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 2.3e-153 546.2 431 62.2
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 3.9e-153 545.4 418 62.7
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-151 539.7 420 64.0
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-151 539.7 420 64.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 6.3e-151 538.1 416 64.9
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.2e-149 533.9 437 61.8
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.7e-149 531.2 428 61.7
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 5.5e-147 525.0 421 61.5
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.2e-146 523.9 444 59.2
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.6e-146 523.5 445 59.1
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.3e-145 519.6 431 61.3
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 8.8e-145 517.7 424 61.6
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.5e-144 516.9 435 57.9
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.3e-143 513.8 417 61.4
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 4.1e-142 508.8 420 59.3
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.6e-141 506.9 426 58.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 5.0e-140 501.9 405 60.0
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.5e-140 501.5 431 57.5
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.9e-139 500.0 436 56.4
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.2e-138 497.3 436 56.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.6e-138 495.7 442 56.8
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 4.7e-138 495.4 433 58.9
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.8e-135 486.1 441 54.6
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 1.8e-134 483.4 432 53.9
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.3e-134 481.9 424 59.4
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 4.5e-133 478.8 438 54.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.7e-132 476.9 434 52.5
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.1e-131 474.2 422 55.5
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-131 473.0 459 50.8
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 4.7e-130 468.8 360 64.4
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.4e-128 462.2 421 54.4
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.0e-117 426.8 399 51.1
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 4.4e-112 409.1 407 54.3
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 1.1e-110 404.4 313 64.9
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 7.0e-110 401.7 435 48.5
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 4.9e-103 379.0 415 47.2
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.7e-100 370.5 302 59.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.2e-98 364.4 419 43.2
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.4e-97 360.9 417 43.2
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.8e-96 355.5 271 62.4
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.7e-95 352.8 428 47.2
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.6e-93 347.4 351 47.9
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 5.2e-89 332.4 428 45.6
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.9e-86 323.9 430 40.5
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.4e-81 307.8 237 63.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.9e-78 297.4 228 65.8
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.5e-75 287.7 262 58.8
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-75 287.0 296 47.3
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 9.3e-54 215.3 141 69.5
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-46 190.7 323 36.2
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 6.1e-45 186.0 157 59.2
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.3e-42 176.0 148 57.4
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-41 175.3 209 48.8
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 5.5e-38 162.9 114 67.5
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.2e-38 162.5 133 57.9
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.4e-38 162.2 218 41.3
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 3.8e-31 140.2 133 55.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.8e-31 140.2 412 26.5
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.1e-30 138.7 115 64.3
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 9.4e-30 135.6 144 53.5
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.6e-21 107.1 80 63.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 4.7e-21 106.7 78 66.7
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-19 102.1 84 59.5
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.2e-18 97.8 71 67.6
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.1e-17 93.6 94 47.9
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-15 88.6 94 54.3
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-15 87.0 88 53.4
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.1e-13 81.3 94 45.7
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.0e-12 79.0 76 44.7
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-12 78.2 60 63.3
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-10 69.7 107 45.8
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.1e-09 68.9 63 55.6
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 7.0e-09 66.2 56 60.7
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 8.6e-07 59.3 164 30.5
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 3.3e-06 57.4 59 52.5
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 4.3e-06 57.0 56 53.6
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 5.6e-06 56.6 55 50.9


User provided reference genes

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