Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 3.9e-126 455.7 420 100.0
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.3e-76 291.2 404 69.8
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.2e-76 290.4 401 71.8
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 3.1e-75 286.6 399 77.9
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 5.4e-75 285.8 402 68.2
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 2.7e-74 283.5 409 67.0
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 2.7e-74 283.5 420 66.4
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 7.7e-74 282.0 404 72.0
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 8.6e-73 278.5 404 68.3
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 8.6e-73 278.5 404 68.3
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 8.6e-73 278.5 407 74.9
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 8.6e-73 278.5 397 68.8
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 1.1e-72 278.1 414 73.4
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.5e-72 277.7 405 75.6
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 1.5e-72 277.7 403 75.7
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.9e-72 277.3 404 72.3
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 3.3e-72 276.6 403 70.5
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 1.2e-71 274.6 404 72.3
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 1.6e-71 274.2 404 72.3
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 1.6e-71 274.2 403 69.7
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 2.8e-71 273.5 399 70.9
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 3.6e-71 273.1 467 54.2
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 4.7e-71 272.7 408 68.1
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.4e-70 271.2 406 71.2
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 1.4e-70 271.2 405 68.9
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 1.4e-70 271.2 405 68.9
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.8e-70 270.8 410 70.5
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 1.8e-70 270.8 405 72.6
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-70 270.4 409 68.9
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 2.3e-70 270.4 405 68.9
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 6.8e-70 268.9 404 69.3
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 6.8e-70 268.9 404 67.6
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.2e-69 268.1 404 71.3
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 2.0e-69 267.3 400 67.2
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 5.7e-69 265.8 404 66.6
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 7.5e-69 265.4 403 66.7
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 1.7e-68 264.2 412 68.4
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.2e-68 263.8 410 72.9
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 2.8e-68 263.5 403 68.0
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 2.8e-68 263.5 405 69.9
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 3.7e-68 263.1 402 69.7
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 1.1e-67 261.5 412 65.3
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.4e-67 261.2 403 66.5
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.8e-67 260.8 403 66.5
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 2.4e-67 260.4 404 70.3
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 4.1e-67 259.6 401 70.1
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 4.1e-67 259.6 404 70.0
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 5.4e-67 259.2 412 65.3
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 9.2e-67 258.5 403 67.7
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 2.0e-66 257.3 400 69.0
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.0e-66 257.3 404 67.3
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 7.8e-66 255.4 409 68.7
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.0e-65 255.0 404 70.3
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 1.0e-65 255.0 412 68.0
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 2.9e-65 253.4 411 68.6
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 2.9e-65 253.4 418 67.7
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 5.0e-65 252.7 400 62.0
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 6.6e-65 252.3 404 66.3
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.1e-64 251.5 404 71.3
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.1e-64 251.5 399 64.7
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 1.1e-64 251.5 396 69.7
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 2.5e-64 250.4 403 68.7
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 3.3e-64 250.0 404 69.6
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 4.3e-64 249.6 403 69.0
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 5.6e-64 249.2 404 69.6
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.2e-63 248.1 401 68.8
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 2.8e-63 246.9 404 65.8
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 3.6e-63 246.5 401 67.8
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 6.1e-63 245.7 399 69.2
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 2.3e-62 243.8 405 67.4
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 4.0e-62 243.0 403 72.2
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 5.2e-62 242.7 405 67.9
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 6.8e-62 242.3 396 67.4
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 8.9e-62 241.9 404 67.8
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 2.6e-61 240.4 402 66.7
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 2.4e-59 233.8 405 73.6
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 3.2e-59 233.4 399 65.4
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 7.8e-58 228.8 406 64.5
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 3.9e-57 226.5 403 60.0
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 1.2e-53 214.9 401 71.6
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 3.4e-53 213.4 402 63.7
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 7.5e-53 212.2 416 56.5
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 6.4e-52 209.1 401 62.1
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.5e-50 203.4 417 59.0
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 6.0e-50 202.6 431 47.3
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 7.8e-50 202.2 406 63.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 3.0e-49 200.3 405 63.7
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 3.0e-49 200.3 398 70.6
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 6.6e-49 199.1 417 67.6
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 1.5e-48 198.0 423 53.7
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 3.6e-47 193.4 403 69.5
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 2.6e-45 187.2 539 28.4
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 7.5e-45 185.7 402 68.4
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 4.9e-44 183.0 396 62.1
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 1.9e-40 171.0 397 67.3
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 2.1e-39 167.5 401 62.1
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 1.7e-36 157.9 404 67.6
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 3.2e-35 153.7 120 64.2
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 4.2e-35 153.3 111 66.7
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 4.2e-35 153.3 111 66.7
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.1e-34 151.0 183 59.0
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 2.7e-34 150.6 107 67.3
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 7.8e-34 149.1 181 60.8
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 1.3e-33 148.3 105 68.6
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.9e-32 144.4 106 65.1
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 7.3e-32 142.5 183 55.7
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 1.1e-30 138.7 106 63.2
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 4.0e-30 136.7 106 61.3
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 5.8e-29 132.9 105 58.1
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.1e-27 128.6 180 45.6
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 1.5e-24 118.2 154 57.1
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.8e-22 111.3 393 38.4
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 3.4e-13 80.5 58 63.8
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 4.0e-06 57.0 111 37.8


User provided reference genes

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