Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 6.4e-155 550.8 302 100.0
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 4.2e-122 441.8 267 89.1
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 4.1e-53 212.6 270 50.0
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 4.3e-50 202.6 251 52.2
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 9.6e-50 201.4 254 48.8
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 9.6e-50 201.4 254 48.8
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 2.9e-46 189.9 253 49.0
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 3.8e-46 189.5 246 50.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.4e-45 187.6 260 45.4
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 2.4e-45 186.8 274 43.8
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 5.4e-45 185.7 268 46.6
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.2e-44 184.5 259 46.7
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.6e-44 184.1 269 47.6
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 2.1e-44 183.7 268 44.0
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.7e-43 180.6 285 41.1
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.5e-42 177.6 286 42.7
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 2.5e-42 176.8 251 45.4
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 4.3e-42 176.0 264 45.5
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 5.6e-42 175.6 268 44.0
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 9.6e-42 174.9 274 46.0
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-41 174.5 269 43.5
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 2.1e-41 173.7 244 46.3
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.8e-41 173.3 240 45.4
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 4.8e-41 172.6 288 39.2
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 8.1e-41 171.8 248 41.9
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.4e-40 170.2 249 45.4
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.1e-40 169.9 248 45.2
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 4.0e-40 169.5 241 44.4
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 5.3e-40 169.1 244 44.7
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 6.9e-40 168.7 285 40.0
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 1.2e-39 167.9 301 41.5
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 7.6e-39 165.2 282 42.2
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 9.9e-39 164.9 266 41.4
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 9.9e-39 164.9 263 45.6
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.3e-38 164.5 268 40.3
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.7e-38 164.1 261 44.4
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.2e-38 163.7 268 39.9
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.9e-38 163.3 243 44.9
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.9e-38 163.3 250 42.0
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 2.9e-38 163.3 261 43.3
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 8.4e-38 161.8 283 42.0
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 8.4e-38 161.8 262 45.4
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.4e-37 161.0 257 43.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.4e-37 161.0 268 42.9
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.4e-37 161.0 259 42.5
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.9e-37 160.6 249 45.0
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.9e-37 160.6 273 42.1
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.4e-37 160.2 273 42.1
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.2e-37 159.8 292 42.1
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.2e-36 157.9 257 42.4
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 2.1e-36 157.1 269 41.6
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.1e-36 157.1 259 41.7
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.5e-36 156.4 249 41.4
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.5e-36 156.4 265 40.0
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.9e-36 155.2 263 36.9
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.3e-35 154.5 249 43.4
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.7e-35 154.1 275 38.9
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.7e-35 154.1 253 42.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 3.9e-35 152.9 278 41.7
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 5.1e-35 152.5 242 44.6
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.7e-35 151.8 240 42.9
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-34 151.0 283 37.5
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.9e-34 150.6 288 36.1
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.3e-34 149.4 262 41.2
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 7.4e-34 148.7 287 39.4
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 7.4e-34 148.7 287 39.4
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.6e-34 148.3 262 40.8
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.3e-33 147.9 288 38.5
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 3.6e-33 146.4 240 43.3
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 3.6e-33 146.4 265 37.0
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 8.1e-33 145.2 289 38.4
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 8.1e-33 145.2 289 38.4
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 8.1e-33 145.2 289 38.4
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.4e-32 144.4 237 42.2
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-32 143.7 263 38.0
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.6e-31 140.2 288 35.4
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.4e-31 139.8 266 36.1
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 5.8e-31 139.0 242 38.8
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.9e-31 138.3 264 36.0
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.2e-30 137.1 259 37.8
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.8e-30 136.3 259 37.8
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.1e-29 134.8 251 39.8
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 1.4e-29 134.4 252 38.9
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.9e-29 134.0 278 35.6
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 5.5e-29 132.5 239 41.4
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.2e-28 131.3 247 39.7
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 2.1e-28 130.6 246 40.7
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.7e-28 130.2 277 36.8
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 4.6e-28 129.4 270 38.5
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 4.6e-28 129.4 262 34.7
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 6.0e-28 129.0 275 37.8
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.8e-27 127.5 242 38.8
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 3.0e-27 126.7 260 39.2
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 3.9e-27 126.3 168 47.6
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 5.1e-27 125.9 266 36.5
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 6.7e-27 125.6 242 38.4
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 8.7e-27 125.2 180 43.3
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 8.7e-27 125.2 266 37.6
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 1.1e-26 124.8 262 35.9
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.5e-26 124.4 254 38.6
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.5e-26 123.6 243 37.9
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 5.6e-26 122.5 267 36.0
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 5.6e-26 122.5 262 34.0
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 1.3e-25 121.3 269 32.7
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.1e-25 120.6 252 38.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.1e-25 120.6 262 38.2
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.7e-25 119.8 247 34.4
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.7e-25 119.8 269 34.9
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 4.8e-25 119.4 272 34.2
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.8e-24 117.5 283 35.0
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 1.8e-24 117.5 246 37.4
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 4.0e-24 116.3 263 34.6
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.0e-24 116.3 261 33.3
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.3e-22 111.3 257 36.6
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-22 111.3 262 30.9
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 1.7e-22 110.9 248 35.5
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 2.2e-22 110.5 276 34.8
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.8e-22 109.8 229 38.0
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 4.9e-22 109.4 189 41.3
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.4e-21 107.8 249 34.1
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.9e-21 107.5 179 39.7
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.5e-21 107.1 248 34.3
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.2e-21 106.7 246 35.4
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.2e-21 106.3 246 35.0
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 7.1e-21 105.5 260 35.0
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 7.1e-21 105.5 244 33.2
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 9.3e-21 105.1 175 40.6
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.2e-20 104.8 213 36.2
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 6.0e-20 102.4 245 32.7
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 7.9e-20 102.1 177 41.8
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 1.3e-19 101.3 243 36.6
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.8e-19 100.9 100 52.0
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 3.9e-19 99.8 263 33.5
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.1e-19 99.4 252 32.5
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 8.7e-19 98.6 234 33.3
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.9e-18 97.4 148 45.3
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 2.5e-18 97.1 266 34.2
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.3e-18 96.3 217 36.9
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.7e-17 93.2 249 33.7
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 3.7e-17 93.2 241 36.9
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 4.8e-17 92.8 226 33.6
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 6.3e-17 92.4 240 32.9
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 2.4e-16 90.5 251 33.5
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 9.0e-16 88.6 158 41.8
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 1.2e-15 88.2 248 33.5
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 1.5e-15 87.8 266 33.5
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 1.5e-15 87.8 262 33.2
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-15 87.8 139 42.4
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 1.0e-14 85.1 241 34.0
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 1.3e-14 84.7 247 33.6
BcaC03g17208 Brassica carinata HOM05D003448 ORTHO05D004028 3.8e-14 83.2 104 47.1
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 8.4e-14 82.0 199 34.2
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.6e-12 77.8 258 30.2
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.1e-12 77.4 140 37.9
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 2.7e-12 77.0 249 31.3
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 6.7e-11 72.4 111 40.5
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.4e-10 68.9 145 37.2
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 1.3e-09 68.2 75 50.7
MSTRG.734 Avicennia marina HOM05D003448 ORTHO05D004028 6.3e-09 65.9 140 36.4
Haze_01654 Corylus avellana HOM05D003448 ORTHO05D004028 1.1e-08 65.1 100 45.0
Medtr3g088965 Medicago truncatula HOM05D001062 ORTHO05D000884 2.0e-07 60.8 211 27.0
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.6e-07 60.5 73 41.1
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 3.4e-07 60.1 70 51.4
COL.COLO4_27959 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.0e-06 58.5 245 28.2
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 1.0e-06 58.5 68 51.5
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-06 57.8 69 49.3
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-06 57.8 69 49.3
Rhsim03G0075600 Rhododendron simsii HOM05D001062 ORTHO05D000884 2.2e-06 57.4 243 26.3
Cc09_g05850 Coffea canephora HOM05D001062 ORTHO05D000884 2.9e-06 57.0 249 26.1
RcHm_v2.0_Chr3g0487681 Rosa chinensis HOM05D017210 ORTHO05D019186 2.9e-06 57.0 274 28.8
Migut.H00698 Erythranthe guttata HOM05D001062 ORTHO05D000884 3.8e-06 56.6 242 26.9
Prupe.1G277700 Prunus persica HOM05D003448 ORTHO05D004028 5.0e-06 56.2 268 29.9
SalBow1G3390 Salvia bowleyana HOM05D001062 ORTHO05D000884 5.0e-06 56.2 240 24.6
HanXRQChr05g0160821 Helianthus annuus HOM05D001062 ORTHO05D000884 8.5e-06 55.5 170 25.3


User provided reference genes

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