Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.6e-74 281.6 317 100.0
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 6.0e-71 271.9 328 62.2
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.9e-64 250.4 313 71.9
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 2.7e-63 246.5 313 69.0
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 6.1e-63 245.4 313 74.8
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 1.3e-62 244.2 313 70.3
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 2.3e-62 243.4 311 76.2
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 3.0e-62 243.0 313 74.4
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 8.7e-62 241.5 313 69.3
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.5e-61 240.7 313 67.4
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 1.5e-61 240.7 313 76.4
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 1.5e-61 240.7 313 67.1
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.9e-61 240.4 313 74.1
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 3.3e-61 239.6 313 69.6
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.3e-61 239.2 317 71.0
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 4.3e-61 239.2 313 75.7
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 5.7e-61 238.8 313 75.1
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 7.4e-61 238.4 310 67.4
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 7.4e-61 238.4 313 69.3
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 9.7e-61 238.0 313 43.8
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 1.3e-60 237.7 314 67.5
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 1.6e-60 237.3 313 75.7
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 1.6e-60 237.3 311 75.2
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 2.8e-60 236.5 311 76.8
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 4.8e-60 235.7 313 74.8
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 8.2e-60 235.0 313 68.4
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 8.2e-60 235.0 311 70.4
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.8e-59 233.8 313 91.1
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 4.1e-59 232.6 312 52.9
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 4.1e-59 232.6 313 90.7
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 4.1e-59 232.6 313 66.1
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 5.3e-59 232.3 314 65.3
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 6.9e-59 231.9 309 76.1
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.2e-58 231.1 313 65.8
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 1.2e-58 231.1 311 74.9
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.2e-58 231.1 313 90.7
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.0e-58 230.3 311 69.5
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 2.6e-58 229.9 313 73.8
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.4e-58 229.6 326 44.2
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 3.4e-58 229.6 309 75.7
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.4e-58 229.6 313 73.5
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 4.5e-58 229.2 313 90.4
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 5.9e-58 228.8 312 80.4
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 1.7e-57 227.3 312 75.6
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.9e-57 226.5 309 54.7
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 5.0e-57 225.7 313 51.8
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 5.0e-57 225.7 310 73.5
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 5.0e-57 225.7 311 65.3
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 1.1e-56 224.6 311 65.0
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.4e-56 224.2 330 40.3
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.9e-56 223.8 319 40.4
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 9.4e-56 221.5 313 89.5
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 9.4e-56 221.5 312 73.1
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 2.1e-55 220.3 309 65.4
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.7e-55 219.9 310 41.0
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 3.6e-55 219.5 313 64.9
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 3.6e-55 219.5 309 64.7
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 3.6e-55 219.5 312 74.0
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 4.6e-55 219.2 313 63.9
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.6e-55 219.2 317 90.9
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 4.6e-55 219.2 307 53.4
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 7.9e-55 218.4 311 88.4
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 7.9e-55 218.4 317 62.5
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 1.0e-54 218.0 312 74.7
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.4e-54 217.6 340 52.6
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 1.8e-54 217.2 313 66.5
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.3e-54 216.9 312 62.2
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.0e-54 216.5 312 74.4
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 3.9e-54 216.1 307 64.8
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 3.9e-54 216.1 313 64.5
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.7e-54 215.3 312 73.7
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.5e-53 214.2 306 65.0
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 2.0e-53 213.8 310 86.8
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 9.7e-53 211.5 312 88.1
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.8e-52 209.9 308 74.4
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 4.8e-52 209.1 311 65.0
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 4.8e-52 209.1 286 77.3
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 6.3e-52 208.8 310 64.8
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 2.4e-51 206.8 311 66.2
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 3.1e-51 206.5 309 81.2
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 4.1e-51 206.1 311 67.5
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.5e-50 204.1 311 88.1
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 5.9e-50 202.2 308 64.0
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 7.7e-50 201.8 310 80.3
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 7.7e-50 201.8 363 35.8
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 1.3e-49 201.1 295 48.1
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 3.8e-49 199.5 321 53.9
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 5.0e-49 199.1 313 63.3
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.5e-49 198.4 347 36.9
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.4e-48 197.6 313 38.3
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 9.4e-48 194.9 312 61.2
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 1.6e-47 194.1 313 62.6
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 1.0e-46 191.4 310 54.8
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.8e-46 190.7 313 69.0
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.8e-46 190.7 285 76.5
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 3.0e-46 189.9 311 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 5.2e-46 189.1 306 80.1
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 8.8e-46 188.3 313 37.4
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 1.1e-45 188.0 309 37.5
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.5e-45 187.6 312 65.1
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 2.6e-45 186.8 284 68.3
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 5.7e-45 185.7 311 60.5
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 5.7e-45 185.7 283 77.4
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 5.7e-45 185.7 286 50.3
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 5.7e-45 185.7 308 83.4
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 5.7e-45 185.7 313 65.5
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 7.4e-45 185.3 305 67.9
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 9.7e-45 184.9 314 36.6
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 9.7e-45 184.9 306 36.9
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.3e-44 184.5 321 35.8
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.8e-44 183.3 288 38.9
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.8e-44 182.6 90 95.6
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.8e-44 182.6 281 50.9
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 8.2e-44 181.8 313 60.1
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.1e-43 181.4 284 74.3
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.4e-43 181.0 284 90.1
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.4e-43 181.0 313 36.1
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 1.8e-43 180.6 282 90.4
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.8e-43 180.6 313 65.5
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 1.2e-42 177.9 283 67.8
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 3.5e-42 176.4 315 35.9
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.2e-41 173.7 410 31.0
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 2.9e-41 173.3 303 36.0
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 5.0e-41 172.6 327 33.6
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.5e-40 171.0 90 84.4
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 5.5e-40 169.1 90 83.3
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 9.4e-40 168.3 90 83.3
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 1.2e-39 167.9 90 82.2
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.7e-39 166.8 90 84.4
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 4.7e-39 166.0 316 34.5
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.4e-38 164.5 89 83.1
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 1.8e-38 164.1 90 82.2
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 2.3e-38 163.7 90 81.1
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 6.7e-38 162.2 303 69.0
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 6.7e-38 162.2 88 80.7
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 6.7e-38 162.2 88 80.7
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 8.8e-38 161.8 90 78.9
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 2.0e-37 160.6 107 72.0
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 4.4e-37 159.5 313 33.5
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 9.7e-37 158.3 90 77.8
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.8e-35 154.1 90 78.9
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.8e-35 154.1 264 50.8
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 4.1e-35 152.9 289 50.9
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.2e-34 151.4 91 75.8
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 1.2e-34 151.4 91 75.8
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 8.5e-33 145.2 311 61.4
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 5.5e-32 142.5 90 71.1
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 4.0e-30 136.3 71 87.3
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 4.0e-30 136.3 90 73.3
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 5.2e-30 136.0 72 80.6
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.5e-29 134.4 89 67.4
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 7.5e-29 132.1 66 90.9
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 3.7e-28 129.8 68 83.8
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 1.1e-27 128.3 68 85.3
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 1.1e-27 128.3 66 84.8
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 2.4e-27 127.1 65 89.2
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 3.1e-27 126.7 67 85.1
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 5.4e-27 125.9 68 82.4
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 1.6e-26 124.4 69 81.2
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.0e-26 124.0 314 30.6
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 2.5e-24 117.1 68 76.5
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 1.6e-23 114.4 70 78.6
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.8e-23 113.6 69 73.9
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 6.1e-23 112.5 55 90.9
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.4e-22 111.3 88 61.4
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 3.0e-22 110.2 56 87.5
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.2e-21 108.2 68 70.6
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 5.7e-21 105.9 90 58.9
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 9.2e-19 98.6 87 48.3
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 9.2e-19 98.6 86 52.3
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 3.5e-18 96.7 83 50.6
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 4.5e-18 96.3 90 47.8
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.7e-17 94.4 99 47.5
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 6.1e-15 85.9 69 58.0
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 4.0e-14 83.2 62 59.7
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 8.9e-14 82.0 93 43.0
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 5.7e-13 79.3 60 63.3
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.2e-11 73.6 41 75.6
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 9.2e-11 72.0 44 72.7
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 4.6e-10 69.7 42 71.4
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 7.8e-10 68.9 73 49.3
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.0e-09 67.0 32 93.8
BcaB01g05424 Brassica carinata HOM05D000005 ORTHO05D000449 2.5e-08 63.9 30 93.3
Medtr8g085230 Medicago truncatula HOM05D003773 ORTHO05D004377 2.1e-07 60.8 35 80.0
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 3.6e-07 60.1 29 79.3


User provided reference genes

Program Settings