Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 0.0e+00 1130.9 603 100.0
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.8e-90 336.7 652 40.0
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.4e-87 328.2 603 41.8
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.7e-87 325.9 606 43.9
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 4.1e-84 316.6 665 36.8
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 9.1e-84 315.5 734 36.5
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.2e-82 310.8 727 37.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.2e-82 310.8 702 36.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 5.5e-81 306.2 662 38.5
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.9e-79 300.1 706 36.4
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.9e-79 300.1 706 36.4
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 9.7e-78 295.4 711 36.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 3.7e-77 293.5 633 38.5
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 3.1e-76 290.4 649 37.4
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 7.7e-75 285.8 673 37.0
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.9e-73 281.2 622 38.9
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 9.4e-73 278.9 643 36.9
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 2.7e-72 277.3 593 39.0
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.7e-72 276.6 727 35.2
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 6.1e-72 276.2 683 35.7
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 9.7e-70 268.9 667 38.5
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.4e-68 264.2 704 33.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 2.4e-68 264.2 605 38.7
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.6e-67 261.5 677 33.8
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.5e-67 260.4 715 35.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.5e-67 260.0 664 35.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.7e-66 258.1 657 34.2
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.9e-65 254.6 574 37.3
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.5e-65 254.2 740 33.4
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 3.2e-65 253.8 585 39.7
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 7.2e-65 252.7 643 33.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 9.4e-65 252.3 661 35.4
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.6e-64 251.5 766 32.5
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 6.1e-64 249.6 537 37.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 6.1e-64 249.6 600 37.5
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 2.3e-63 247.7 706 33.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.0e-63 246.9 660 33.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.8e-63 246.1 618 35.1
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 4.8e-61 240.0 733 31.9
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.8e-61 240.0 520 37.7
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.1e-60 238.8 555 37.3
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.8e-60 238.0 662 34.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.4e-60 237.7 519 38.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-59 235.0 527 37.2
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.0e-58 232.3 568 36.6
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 6.5e-58 229.6 651 33.9
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.5e-57 228.4 572 35.3
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 5.5e-57 226.5 557 37.0
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 9.4e-57 225.7 614 33.2
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.2e-56 225.3 542 37.3
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.7e-56 224.2 172 70.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.6e-56 223.8 642 34.0
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 4.7e-56 223.4 524 37.8
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.3e-55 221.1 548 35.6
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 3.0e-55 220.7 523 35.4
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 5.2e-55 219.9 718 30.5
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.5e-54 218.4 554 35.0
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 2.0e-54 218.0 553 34.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 5.7e-54 216.5 523 37.1
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 9.8e-54 215.7 593 34.2
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 9.8e-54 215.7 482 39.0
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.3e-53 215.3 633 32.5
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-53 214.9 560 34.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 2.2e-53 214.5 605 32.7
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.8e-53 214.2 606 33.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.7e-53 213.8 562 36.3
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.4e-52 211.8 180 67.2
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.4e-52 211.8 681 32.7
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.4e-52 211.1 555 33.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.5e-51 207.2 612 33.5
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 7.7e-51 206.1 177 64.4
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.0e-50 205.7 537 34.8
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 5.0e-50 203.4 597 32.8
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.3e-49 200.7 692 31.2
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.2e-48 198.7 590 34.4
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 4.7e-48 196.8 564 33.3
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 6.1e-48 196.4 622 32.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.8e-47 194.9 575 33.7
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.2e-47 193.4 714 29.3
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.2e-46 192.2 461 36.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.5e-46 191.8 663 32.1
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 4.4e-46 190.3 674 30.9
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.7e-45 188.3 663 32.4
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 2.2e-45 188.0 573 33.5
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 3.7e-45 187.2 589 31.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.4e-45 186.4 606 31.5
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.0e-44 183.0 654 32.1
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 9.2e-44 182.6 638 31.5
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.6e-43 180.3 674 31.2
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.3e-42 178.7 165 61.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 5.0e-42 176.8 583 29.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.0e-42 176.8 651 32.3
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 8.6e-42 176.0 572 32.9
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 8.6e-42 176.0 651 32.3
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 6.2e-40 169.9 442 32.8
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.0e-39 169.1 770 28.1
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.4e-39 168.7 133 70.7
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-39 168.3 655 32.1
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 5.2e-39 166.8 591 30.6
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 1.5e-38 165.2 571 29.8
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.5e-38 165.2 593 30.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 2.6e-38 164.5 601 29.8
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.9e-37 161.0 189 55.0
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 6.4e-37 159.8 598 30.4
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.4e-36 158.7 168 58.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.4e-36 157.9 153 60.8
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 2.0e-35 154.8 609 32.3
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.7e-35 154.5 113 71.7
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-35 154.1 191 52.4
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.9e-34 150.6 564 31.0
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.0e-34 150.2 166 52.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.5e-33 148.7 158 57.0
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 7.3e-33 146.4 449 31.8
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 6.2e-32 143.3 141 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 8.1e-32 142.9 445 33.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.4e-30 137.5 534 29.4
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 5.8e-30 136.7 629 30.8
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.3e-29 135.6 157 52.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.4e-28 132.1 166 49.4
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.2e-27 129.0 527 29.8
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 6.0e-27 126.7 130 55.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.0e-27 126.7 164 46.3
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.3e-26 124.8 213 43.7
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 5.1e-26 123.6 182 45.6
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.1e-25 122.5 163 48.5
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.1e-25 122.5 163 48.5
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 5.6e-25 120.2 102 62.7
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.8e-24 117.9 139 53.2
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 4.7e-24 117.1 450 29.3
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 4.7e-24 117.1 662 28.1
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 5.2e-23 113.6 161 44.1
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 6.8e-23 113.2 461 28.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.8e-23 113.2 231 35.1
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.2e-22 112.5 508 27.4
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.5e-22 112.1 86 66.3
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 5.8e-22 110.2 648 27.3
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.9e-21 107.8 86 64.0
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.7e-21 107.5 72 75.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 6.4e-21 106.7 654 26.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 8.4e-21 106.3 86 62.8
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 2.4e-20 104.8 131 48.1
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 1.2e-19 102.4 424 28.3
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.7e-18 98.6 480 26.7
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.2e-12 77.8 158 34.8
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 2.0e-06 58.5 37 78.4


User provided reference genes

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