Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 9.0e-251 869.8 433 100.0
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 2.0e-181 639.4 422 74.2
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 4.4e-181 638.3 412 74.3
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 7.5e-181 637.5 422 73.5
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.1e-179 633.6 414 72.5
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 3.1e-179 632.1 415 73.3
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 1.6e-178 629.8 422 72.5
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 5.0e-177 624.8 414 71.7
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 2.5e-176 622.5 414 72.9
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 1.2e-175 620.2 421 72.2
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 4.7e-175 618.2 422 73.0
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 1.8e-174 616.3 415 72.0
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 3.0e-174 615.5 415 73.0
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 4.4e-173 611.7 416 70.7
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 3.7e-172 608.6 419 71.6
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 4.9e-172 608.2 412 70.9
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 1.4e-171 606.7 405 71.4
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 2.4e-171 605.9 422 70.1
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 3.1e-171 605.5 413 70.0
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 9.2e-171 604.0 421 69.8
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 1.6e-170 603.2 420 71.4
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.0e-170 602.8 406 71.4
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 5.9e-170 601.3 405 70.4
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 1.3e-169 600.1 414 70.8
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 2.3e-169 599.4 415 70.8
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 9.5e-168 594.0 418 69.4
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 2.1e-167 592.8 415 70.8
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 4.7e-167 591.7 409 70.4
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 6.1e-167 591.3 411 68.9
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 5.2e-166 588.2 415 69.6
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 6.8e-166 587.8 419 67.3
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 8.9e-166 587.4 421 67.2
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 8.9e-166 587.4 404 69.8
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.5e-165 586.6 414 68.6
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 1.7e-164 583.2 417 69.1
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.9e-164 582.4 414 68.6
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 3.7e-164 582.0 414 68.8
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 3.2e-163 578.9 404 68.3
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 4.1e-163 578.6 414 66.9
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 2.7e-162 575.9 409 69.2
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.7e-162 575.9 441 64.6
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 6.0e-162 574.7 406 68.7
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 7.8e-162 574.3 442 64.7
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 1.0e-161 573.9 410 69.0
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.7e-161 573.2 405 67.9
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 2.3e-161 572.8 406 66.7
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 5.0e-161 571.6 405 67.7
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 6.6e-161 571.2 410 66.1
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 8.6e-161 570.9 427 65.3
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.5e-160 570.1 405 66.9
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 4.3e-160 568.5 412 66.0
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 9.5e-160 567.4 405 66.2
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 9.5e-160 567.4 406 68.5
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 4.7e-159 565.1 405 68.6
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 4.0e-158 562.0 407 69.3
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 6.8e-158 561.2 405 68.1
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 6.8e-158 561.2 427 63.7
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 6.8e-158 561.2 413 64.6
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 1.7e-156 556.6 406 68.5
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 2.2e-156 556.2 414 68.1
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 1.4e-155 553.5 406 66.5
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 1.6e-154 550.1 404 68.1
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 5.1e-153 545.0 420 64.8
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 6.8e-150 534.6 422 63.3
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 1.6e-146 523.5 410 62.4
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 1.0e-145 520.8 407 62.9
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 2.3e-145 519.6 439 59.5
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.9e-144 516.5 406 62.6
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 1.2e-143 513.8 406 61.3
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 3.1e-142 509.2 415 59.5
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.5e-133 480.3 407 56.5
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 6.2e-127 458.4 319 71.2
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 1.1e-123 447.6 336 65.5
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 3.0e-121 439.5 285 75.4
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 6.0e-114 415.2 425 49.2
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 3.9e-113 412.5 408 50.5
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 6.2e-111 405.2 414 51.4
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 1.5e-109 400.6 348 58.0
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.1e-107 394.4 422 47.2
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.1e-107 394.4 404 49.0
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 7.9e-106 388.3 306 62.7
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 1.0e-100 371.3 383 48.3
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 1.3e-100 370.9 315 58.7
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 5.5e-99 365.5 438 43.6
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 7.9e-98 361.7 449 44.8
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 3.3e-96 356.3 459 42.7
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 5.7e-88 328.9 263 62.7
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 3.0e-73 280.0 296 51.7
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 6.5e-68 262.3 141 85.1
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.5e-67 261.2 149 78.5
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 9.4e-67 258.5 258 55.4
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 4.4e-64 249.6 141 78.7
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 2.8e-63 246.9 141 79.4
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 8.3e-63 245.4 270 48.9
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 3.5e-61 240.0 254 51.6
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.7e-60 237.7 166 61.4
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 4.1e-54 216.5 268 48.1
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 5.0e-52 209.5 201 57.7
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 6.0e-45 186.0 124 71.8
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 2.0e-40 171.0 141 61.0
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.9e-38 164.5 140 52.1
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 3.2e-38 163.7 90 84.4
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 5.1e-36 156.4 122 60.7
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 3.8e-23 113.6 94 59.6
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.4e-22 110.9 228 32.0
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 9.3e-22 109.0 171 36.8
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 5.1e-20 103.2 50 88.0
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 1.1e-19 102.1 103 55.3
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.9e-19 101.3 110 42.7
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.9e-19 101.3 105 45.7
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.3e-18 98.6 57 80.7
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 2.4e-17 94.4 110 40.0
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.3e-17 93.2 110 41.8
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 1.3e-15 88.6 138 40.6
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.6e-13 81.6 51 70.6
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 1.0e-12 79.0 55 69.1
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.9e-11 74.7 175 29.1
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 3.3e-11 73.9 180 28.9
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.3e-10 72.0 168 29.8
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 2.8e-10 70.9 168 28.6
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 2.8e-10 70.9 169 28.4
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.6e-10 70.5 172 28.5
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 4.8e-10 70.1 160 26.9
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 4.8e-10 70.1 168 28.0
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 6.2e-10 69.7 168 28.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 6.2e-10 69.7 168 29.8
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 8.1e-10 69.3 161 27.3
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 8.1e-10 69.3 160 26.9
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.1e-09 67.4 160 26.9
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 3.1e-09 67.4 161 28.0
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 3.1e-09 67.4 168 28.6
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 3.1e-09 67.4 160 26.9
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 4.0e-09 67.0 160 26.9
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 5.3e-09 66.6 160 26.9
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 5.3e-09 66.6 160 27.5
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 5.3e-09 66.6 168 27.4
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 6.9e-09 66.2 160 26.2
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 6.9e-09 66.2 160 26.9
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 6.9e-09 66.2 214 24.8
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 6.9e-09 66.2 160 29.4
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 6.9e-09 66.2 160 26.2
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 9.0e-09 65.9 160 25.6
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 9.0e-09 65.9 160 26.9
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.2e-08 65.5 205 23.9
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.0e-08 64.7 168 26.2
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 2.6e-08 64.3 160 26.2
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.6e-08 64.3 160 25.6
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 4.5e-08 63.5 202 22.8
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 4.5e-08 63.5 160 26.9
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 5.8e-08 63.2 168 26.8
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 1.3e-07 62.0 160 25.0
SMO334G0059 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.3e-07 62.0 66 42.4
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 1.7e-07 61.6 173 28.9
AagrBONN_evm.TU.Sc2ySwM_368.978 Anthoceros agrestis HOM05D016606 ORTHO05D018318 8.4e-07 59.3 161 28.6
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 4.2e-06 57.0 143 28.0


User provided reference genes

Program Settings