Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 8.3e-135 483.8 260 100.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 3.1e-33 146.4 298 38.3
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 8.0e-29 131.7 311 34.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 4.1e-25 119.4 315 31.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 4.1e-25 119.4 307 31.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 5.4e-25 119.0 294 34.7
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.2e-24 117.9 292 33.9
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.0e-23 114.8 294 36.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.3e-23 114.4 297 40.1
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.8e-23 112.8 298 38.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-22 111.3 299 31.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.1e-22 111.3 304 37.5
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-22 110.9 315 30.8
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-22 110.9 315 31.1
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.5e-22 110.9 314 36.9
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 2.5e-22 110.2 293 34.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.3e-22 109.8 312 34.3
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.3e-22 109.4 307 31.9
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.3e-22 109.4 318 33.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 5.6e-22 109.0 302 34.4
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.6e-22 109.0 301 37.2
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 9.5e-22 108.2 310 30.3
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 9.5e-22 108.2 311 36.3
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.6e-21 107.5 314 32.8
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.6e-21 106.3 289 33.6
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 6.1e-21 105.5 310 34.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.0e-21 105.1 296 36.8
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.0e-20 104.8 265 36.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.4e-20 104.4 325 34.2
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.8e-20 104.0 305 32.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.8e-20 104.0 313 29.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-20 104.0 285 35.8
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.3e-20 103.6 302 38.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 4.0e-20 102.8 285 35.4
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.2e-20 102.4 292 37.3
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 8.9e-20 101.7 309 30.7
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.9e-20 101.7 293 35.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.2e-19 101.3 275 32.0
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.0e-19 100.5 300 35.7
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 2.0e-19 100.5 299 31.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.0e-19 100.5 311 33.8
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.4e-19 99.8 278 36.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.8e-19 99.0 286 30.1
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 5.8e-19 99.0 315 32.4
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 7.5e-19 98.6 207 36.2
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.5e-19 98.6 305 37.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.3e-18 97.8 307 33.9
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.7e-18 97.4 302 35.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.7e-18 96.3 313 31.0
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 8.3e-18 95.1 309 31.4
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 8.3e-18 95.1 296 32.8
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.1e-17 94.7 299 34.8
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.4e-17 94.4 295 34.2
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.2e-17 93.2 326 33.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 3.2e-17 93.2 310 32.6
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.1e-17 92.8 309 35.0
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 7.0e-17 92.0 193 36.8
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 7.0e-17 92.0 296 28.4
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.0e-17 92.0 311 29.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 9.2e-17 91.7 300 32.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.2e-16 91.3 304 34.9
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.6e-16 90.9 285 31.9
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.6e-16 90.9 311 28.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.7e-16 90.1 196 34.2
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.7e-16 90.1 301 33.9
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.5e-16 89.7 273 28.2
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 3.5e-16 89.7 301 33.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.5e-16 89.7 297 33.3
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 4.6e-16 89.4 227 31.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 7.8e-16 88.6 284 31.3
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.9e-15 86.3 276 33.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.3e-14 83.2 306 34.3
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.3e-14 82.8 266 33.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 5.6e-14 82.4 294 33.0
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.3e-14 82.0 240 29.6
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 7.3e-14 82.0 281 29.5
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 9.5e-14 81.6 174 35.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.5e-14 81.6 161 36.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.2e-13 81.3 273 31.1
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.2e-13 81.3 272 28.3
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.1e-13 80.5 192 31.2
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.6e-13 79.7 321 29.9
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 4.7e-13 79.3 275 29.1
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.4e-12 77.8 312 31.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-12 77.4 305 27.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.8e-12 77.4 295 25.8
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.3e-12 77.0 300 28.0
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.1e-12 76.6 299 27.8
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.1e-12 76.6 242 29.8
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 4.0e-12 76.3 159 34.6
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 4.0e-12 76.3 240 34.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.5e-11 74.3 245 32.7
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.4e-11 73.2 258 31.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.4e-11 73.2 283 29.7
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 7.5e-11 72.0 280 26.8
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.9e-10 70.1 158 32.3
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 4.9e-10 69.3 219 32.9
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.4e-10 68.9 276 33.0
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.1e-09 68.2 147 35.4
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.4e-09 67.8 299 28.8
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.9e-09 67.4 309 29.1
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.4e-09 67.0 294 31.3
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.4e-09 67.0 294 31.3
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.2e-09 66.6 270 31.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 4.1e-09 66.2 304 27.3
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 5.4e-09 65.9 167 35.3
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.6e-08 64.3 293 31.7
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 2.1e-08 63.9 158 34.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.5e-08 63.2 302 25.2
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-07 61.2 307 30.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 3.9e-07 59.7 264 31.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 3.9e-07 59.7 264 31.8
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 3.9e-07 59.7 264 31.8
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 3.9e-07 59.7 101 38.6
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 5.0e-07 59.3 235 34.0
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 6.6e-07 58.9 239 33.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 8.6e-07 58.5 127 32.3
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.1e-06 58.2 277 27.4
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-06 57.8 130 32.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.9e-06 57.4 138 31.2
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.9e-06 57.4 160 28.8
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.9e-06 57.4 248 29.0
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 3.3e-06 56.6 163 28.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 3.3e-06 56.6 163 28.8
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 7.3e-06 55.5 132 29.5
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.5e-06 55.1 139 28.1
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 9.5e-06 55.1 127 31.5


User provided reference genes

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