Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.1e-257 891.0 474 100.0
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 5.3e-172 608.2 473 66.4
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.5e-171 606.7 473 66.2
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 7.7e-171 604.4 481 66.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.0e-167 594.0 499 62.9
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 3.2e-161 572.4 484 63.4
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 9.4e-161 570.9 478 61.3
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.4e-159 567.0 486 62.1
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 4.0e-159 565.5 478 62.1
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.8e-159 564.3 475 62.7
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.6e-158 562.8 479 62.8
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 9.7e-158 560.8 485 60.8
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.3e-157 558.1 474 63.7
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 3.1e-156 555.8 476 63.4
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.8e-154 548.9 474 62.4
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 4.7e-152 542.0 476 60.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 4.7e-152 542.0 490 60.6
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 8.8e-151 537.7 483 59.8
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.2e-150 537.3 479 61.4
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 2.6e-150 536.2 487 60.4
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 2.6e-150 536.2 478 60.9
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.7e-149 533.5 489 62.0
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 2.8e-149 532.7 484 61.6
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 8.3e-149 531.2 479 59.7
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 5.4e-148 528.5 486 60.3
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 5.4e-148 528.5 481 60.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 7.0e-148 528.1 488 58.4
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 7.0e-148 528.1 488 58.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 7.0e-148 528.1 473 60.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 7.0e-148 528.1 475 62.5
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.2e-147 527.3 505 59.0
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.7e-147 526.2 478 62.8
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 3.5e-147 525.8 482 62.2
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 4.5e-147 525.4 476 59.7
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.3e-146 523.9 480 60.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.7e-146 523.5 479 62.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.7e-146 523.5 483 61.3
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.7e-146 523.5 474 58.4
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.7e-146 523.5 489 59.3
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 2.9e-146 522.7 479 62.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.9e-146 522.7 482 61.6
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 6.5e-146 521.5 478 62.3
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.6e-146 521.2 478 58.6
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.1e-145 520.8 481 59.3
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.5e-145 520.4 488 57.4
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.9e-145 520.0 485 61.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 3.2e-145 519.2 488 55.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 5.5e-145 518.5 476 59.9
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 9.5e-145 517.7 484 61.4
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 2.8e-144 516.2 474 59.5
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.4e-143 513.8 492 57.1
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 4.0e-143 512.3 476 61.1
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 6.8e-143 511.5 479 61.6
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 6.8e-143 511.5 481 60.7
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 5.7e-142 508.4 483 56.1
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 9.8e-142 507.7 475 61.3
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.2e-141 506.5 483 57.6
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 4.9e-141 505.4 473 59.0
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 4.9e-141 505.4 490 56.7
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 4.9e-141 505.4 489 58.3
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 8.3e-141 504.6 486 60.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-140 503.1 475 60.6
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 7.0e-140 501.5 474 57.8
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 3.5e-139 499.2 480 60.4
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 4.5e-139 498.8 473 58.8
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 7.8e-139 498.0 485 55.5
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.3e-138 497.3 473 59.0
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.7e-138 496.9 479 59.3
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.8e-138 495.7 475 56.2
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 6.6e-138 495.0 472 60.0
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 8.6e-138 494.6 476 56.9
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 3.3e-137 492.7 506 55.7
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 4.3e-137 492.3 518 53.9
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 9.5e-137 491.1 484 56.4
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.2e-136 490.7 483 56.3
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 6.1e-136 488.4 475 56.0
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.4e-135 487.3 475 60.4
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.0e-134 483.4 490 55.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.6e-134 483.0 479 54.7
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.6e-134 483.0 503 54.9
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.4e-134 482.6 397 65.7
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.7e-134 481.9 480 55.2
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 9.8e-134 481.1 495 55.2
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.3e-133 480.7 493 58.0
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 6.4e-133 478.4 477 58.1
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 2.4e-132 476.5 381 62.2
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 5.4e-132 475.3 458 57.6
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 4.6e-131 472.2 477 55.6
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.7e-130 470.3 433 60.5
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 6.6e-130 468.4 522 51.9
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.1e-129 467.6 484 59.3
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.3e-127 459.9 492 53.9
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.0e-122 444.5 499 53.3
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.7e-122 443.7 477 50.3
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 5.0e-122 442.2 482 51.7
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.5e-121 440.7 477 49.9
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.2e-120 437.6 441 56.0
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 5.4e-116 422.2 428 57.5
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.3e-113 412.5 405 58.0
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 3.6e-112 409.5 479 49.9
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.6e-110 401.7 405 57.0
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.7e-109 400.6 481 49.7
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 7.6e-102 375.2 504 49.6
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 4.2e-100 369.4 306 59.5
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 7.9e-91 338.6 481 43.7
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.6e-88 330.9 469 42.2
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 3.5e-83 313.2 480 42.1
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 6.2e-80 302.4 394 45.4
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.4e-79 301.2 315 53.0
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.3e-77 294.7 182 77.5
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.7e-73 278.5 478 39.3
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.4e-66 258.1 314 49.7
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.9e-65 254.2 318 47.5
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.3e-64 251.5 228 57.0
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.4e-60 238.0 350 42.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 3.2e-60 236.9 244 54.1
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 4.2e-60 236.5 227 54.6
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 5.3e-55 219.5 319 42.9
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.6e-54 217.2 224 52.7
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 4.1e-47 193.4 333 35.7
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 8.8e-42 175.6 152 59.2
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.8e-40 169.9 234 41.9
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.3e-37 161.8 296 35.8
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 7.5e-33 146.0 178 59.0
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 3.6e-27 127.1 137 49.6
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 4.1e-23 113.6 191 40.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.7e-21 108.2 111 51.4
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 5.6e-20 103.2 94 52.1
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 5.8e-17 93.2 261 29.1
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.9e-16 90.1 74 60.8
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.7e-08 65.1 115 37.4
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 8.3e-08 62.8 61 60.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.9e-07 61.6 114 34.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.2e-07 60.8 120 31.7
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 4.1e-07 60.5 98 33.7
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.1e-07 60.5 119 34.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.4e-07 60.1 117 33.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.4e-07 60.1 117 33.3
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.4e-07 60.1 119 31.9
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 7.0e-07 59.7 113 27.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 7.0e-07 59.7 119 32.8
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 9.2e-07 59.3 119 32.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 9.2e-07 59.3 117 33.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.2e-06 58.9 156 28.8
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-06 58.9 118 33.9
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.6e-06 58.5 134 33.6
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 1.6e-06 58.5 48 54.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.1e-06 58.2 119 32.8
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.1e-06 58.2 119 33.6
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 2.1e-06 58.2 54 46.3
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.7e-06 57.8 119 32.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.5e-06 57.4 136 27.9
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.5e-06 57.4 114 32.5
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.5e-06 57.4 156 28.8
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 3.5e-06 57.4 46 50.0
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 3.5e-06 57.4 46 50.0
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 3.5e-06 57.4 46 50.0
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 4.6e-06 57.0 152 28.3
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 4.6e-06 57.0 119 32.8
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 6.0e-06 56.6 45 53.3
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 6.0e-06 56.6 45 53.3
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 6.0e-06 56.6 73 41.1
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 6.0e-06 56.6 44 50.0


User provided reference genes

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