Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1755.7 921 100.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1578.1 923 88.0
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1535.4 921 84.6
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1528.1 921 84.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1525.4 921 83.9
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1525.0 921 83.7
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1521.1 920 84.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 921 84.5
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1518.1 922 83.8
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1517.3 921 84.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 921 82.0
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1513.0 921 83.3
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1511.9 921 84.5
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 924 82.9
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1503.0 921 81.1
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1501.5 921 82.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1501.1 921 81.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1500.7 921 82.8
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1499.6 921 83.5
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1499.6 921 82.7
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1496.9 921 82.7
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1496.5 921 80.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1496.5 921 82.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1494.6 921 80.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1494.2 921 83.1
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1492.6 921 82.0
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1491.5 921 81.9
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1487.6 921 82.3
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1486.9 921 82.1
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1486.5 923 82.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1479.5 922 80.7
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1474.9 923 80.9
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1474.5 922 80.5
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1473.4 922 80.4
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 921 81.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1467.6 921 81.8
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1461.0 924 80.1
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1459.5 973 77.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1455.7 921 80.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1452.6 921 80.9
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1451.0 921 80.6
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1450.6 921 79.9
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 921 79.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 921 79.5
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1447.6 921 79.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1447.6 921 80.5
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1445.6 927 79.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1444.1 921 80.0
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1439.5 921 78.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1438.7 921 78.4
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1435.6 922 77.8
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1422.9 923 78.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1420.2 922 77.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1416.4 926 77.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1416.4 926 77.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1414.8 922 76.7
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1412.9 924 76.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1412.5 891 81.1
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1409.4 923 77.5
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1408.7 921 77.5
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1402.1 923 78.1
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1400.6 921 77.0
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1399.0 921 78.0
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1396.7 924 77.4
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1396.3 921 78.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1395.9 921 77.5
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1395.9 922 76.6
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1392.9 921 76.4
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1390.6 921 77.1
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1388.2 923 75.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1384.0 921 75.8
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1381.7 923 75.8
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1377.1 922 76.1
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1370.9 921 75.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1368.2 926 74.7
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1367.1 924 75.1
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1366.7 922 74.9
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1360.1 924 74.8
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1359.0 926 74.4
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1357.4 924 74.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1357.4 926 74.1
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1356.3 859 78.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1352.0 926 73.7
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1351.3 926 73.7
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1350.9 892 76.3
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1347.8 925 73.2
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1347.0 926 73.2
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1343.6 926 73.4
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1341.3 926 73.1
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1339.3 926 73.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1337.0 926 73.2
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1335.1 925 72.5
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1335.1 925 72.5
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1334.3 925 72.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1333.9 924 74.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1333.5 925 72.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1332.8 925 72.4
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1329.7 889 76.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1322.8 795 85.3
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1309.7 884 76.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1245.0 940 68.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1233.4 893 70.7
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1230.3 924 67.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1217.6 921 67.1
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1142.9 921 62.4
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.4e-301 1038.9 670 79.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.9e-290 1002.7 761 68.6
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 2.5e-290 1002.3 609 85.1
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.7e-278 961.8 734 66.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.4e-271 938.3 924 52.5
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 2.0e-263 912.9 586 79.4
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 7.5e-263 911.0 925 50.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.7e-254 882.1 924 48.1
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 2.3e-248 862.8 925 48.8
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 8.1e-193 678.3 733 52.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.3e-186 656.4 934 40.9
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.3e-177 625.5 397 79.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-165 587.4 366 79.5
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.3e-162 576.6 468 61.5
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 4.7e-124 449.9 355 65.1
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.6e-93 346.7 314 62.1
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.4e-88 332.0 206 79.6
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 5.4e-80 303.5 205 73.2
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.1e-79 301.6 365 47.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.2e-74 285.8 1036 27.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 5.5e-64 250.4 326 45.7
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.0e-62 244.6 992 26.6
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 8.2e-52 209.9 245 57.6
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 6.5e-49 200.3 177 62.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.4e-38 166.0 103 75.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.9e-34 150.6 100 81.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.7e-31 141.0 186 40.9
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 6.7e-30 137.1 110 70.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 6.3e-28 130.6 69 87.0
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.4e-27 129.4 68 86.8
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 9.1e-27 126.7 86 77.9
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 7.7e-26 123.6 86 76.7
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 3.6e-07 61.6 45 77.8


User provided reference genes

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