Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.0e-242 842.0 434 100.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 5.3e-195 684.5 433 85.9
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.3e-184 648.7 435 75.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.3e-176 620.9 417 77.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.5e-176 620.5 417 76.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 9.5e-176 620.5 417 76.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.2e-174 614.8 416 75.5
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 8.9e-174 614.0 432 72.5
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 8.9e-174 614.0 416 75.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.9e-172 608.2 432 71.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.7e-170 602.4 429 71.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.5e-170 602.1 424 72.9
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 4.6e-170 601.7 431 71.5
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.0e-169 600.5 434 71.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.6e-169 597.4 418 73.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.1e-166 590.5 440 69.5
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 3.4e-165 585.5 434 69.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 5.8e-165 584.7 461 66.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.4e-163 579.3 418 72.5
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 4.1e-163 578.6 421 70.3
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 6.6e-161 571.2 419 68.7
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.5e-160 569.3 418 70.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.3e-160 568.9 421 69.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.5e-160 567.4 431 67.7
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-159 567.0 434 68.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-158 563.9 435 67.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.3e-158 562.8 421 68.2
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.0e-157 559.7 418 67.7
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.6e-157 559.3 435 66.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 2.6e-157 559.3 435 66.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.2e-156 556.2 402 69.7
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.7e-156 555.4 433 64.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.1e-155 553.9 399 70.9
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-155 553.5 418 67.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.4e-155 552.7 417 66.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.0e-154 548.1 393 72.5
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-153 547.0 410 67.1
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.0e-153 545.8 399 69.2
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 6.6e-153 544.7 418 66.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 8.6e-153 544.3 436 64.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-152 543.9 418 66.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.9e-152 543.1 418 65.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 3.3e-152 542.3 419 66.3
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.3e-152 542.3 433 66.1
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.5e-152 540.8 434 62.2
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-151 540.4 404 67.6
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.6e-151 540.0 417 66.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.6e-151 540.0 429 66.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.1e-151 539.7 429 66.4
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.1e-151 539.7 416 66.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.8e-151 539.3 425 65.9
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 3.6e-151 538.9 422 64.9
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-150 536.6 441 63.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.2e-150 535.0 425 65.6
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 5.2e-150 535.0 418 65.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 8.9e-150 534.3 418 65.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.6e-149 532.7 433 63.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-149 532.7 405 67.2
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.4e-149 532.3 433 64.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.4e-149 531.9 436 64.7
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 7.6e-149 531.2 421 65.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.2e-148 529.6 433 63.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.2e-148 529.6 425 65.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.9e-148 529.3 425 64.7
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.8e-148 528.9 418 64.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.1e-146 523.1 417 65.5
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.7e-146 522.7 396 66.9
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.3e-145 519.6 421 65.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.6e-145 518.1 442 62.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.5e-144 516.9 422 64.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.9e-144 516.5 434 61.3
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.3e-144 515.8 414 66.2
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.4e-142 510.4 434 60.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.8e-142 510.0 415 65.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.4e-142 509.6 405 65.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.1e-142 509.2 434 60.6
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.1e-142 509.2 432 62.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.0e-142 508.8 425 62.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.3e-142 508.4 418 62.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.9e-141 504.2 421 62.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.7e-140 503.4 421 62.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.7e-140 503.4 424 61.8
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.7e-140 503.4 525 53.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 3.2e-139 499.2 357 68.6
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.2e-138 497.3 419 62.1
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.6e-138 496.9 357 70.0
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.7e-138 496.1 417 62.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.0e-138 495.0 434 59.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.3e-137 493.0 380 66.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 5.6e-136 488.4 395 62.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 7.3e-136 488.0 403 62.5
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 9.6e-136 487.6 428 60.3
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 9.6e-136 487.6 375 68.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.8e-135 486.1 439 58.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.2e-135 485.0 346 69.4
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-134 483.8 466 57.5
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 9.0e-134 481.1 355 71.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.2e-132 476.5 421 60.1
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 7.1e-131 471.5 459 56.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.1e-130 469.9 418 57.9
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.0e-130 468.4 389 60.4
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-129 467.2 438 57.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.9e-129 465.7 438 56.8
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.5e-128 463.8 435 57.0
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-126 456.8 430 56.7
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.8e-126 456.8 439 56.0
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.4e-126 456.4 418 57.9
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.4e-126 456.4 434 54.1
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.1e-126 456.1 433 56.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 4.0e-126 455.7 436 55.5
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 3.4e-125 452.6 435 54.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.3e-124 450.7 437 56.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-124 450.7 379 63.6
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.7e-124 450.3 436 55.3
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.2e-124 449.9 435 56.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.8e-124 449.1 436 55.0
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.5e-123 446.4 437 56.3
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.5e-123 445.3 437 56.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 9.3e-123 444.5 407 58.0
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 3.9e-121 439.1 431 55.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.1e-119 433.3 435 56.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-118 430.6 433 55.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-117 426.4 420 56.2
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-115 421.0 437 54.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-115 421.0 437 54.0
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.2e-115 419.5 433 52.9
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.2e-115 419.1 444 55.0
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 3.1e-110 402.9 433 52.4
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.1e-110 402.5 437 52.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-106 390.6 388 56.2
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 7.9e-106 388.3 425 52.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.1e-102 375.9 415 51.3
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 7.2e-99 365.2 372 50.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-97 360.5 405 51.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.1e-96 357.8 216 76.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 3.7e-95 352.8 216 76.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 8.2e-95 351.7 430 46.3
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-94 351.3 423 51.3
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.2e-90 337.8 309 53.4
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.1e-88 331.3 434 45.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.1e-86 322.8 383 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.3e-84 317.8 310 51.6
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.3e-84 317.8 341 52.8
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.2e-83 313.2 296 58.8
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.2e-81 305.8 222 63.5
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.0e-76 291.6 277 57.0
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 8.8e-73 278.5 180 74.4
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.4e-56 223.4 156 69.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.2e-55 220.7 239 55.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.6e-53 213.0 135 68.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 4.0e-49 199.9 208 55.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 8.6e-44 182.2 247 40.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 6.4e-39 166.0 244 34.8
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 7.3e-35 152.5 190 39.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 2.8e-34 150.6 95 69.5
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.8e-34 150.6 201 46.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.2e-29 135.2 229 42.8
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.9e-27 127.9 76 76.3
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.6e-24 115.9 71 70.4
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.1e-18 97.8 60 73.3
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.1e-17 95.5 247 26.3
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 5.6e-11 73.2 43 79.1
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 6.2e-10 69.7 74 50.0
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.6e-08 62.8 98 33.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.5e-06 56.6 46 65.2


User provided reference genes

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