Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.0e-80 302.0 173 100.0
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.0e-56 223.8 197 67.0
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 2.8e-54 215.7 192 64.6
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 3.4e-52 208.8 197 65.0
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.3e-51 206.8 196 66.3
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 6.5e-51 204.5 209 63.2
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 8.4e-51 204.1 198 65.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.5e-50 202.6 197 65.0
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 4.2e-50 201.8 197 64.5
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 5.5e-50 201.4 192 67.2
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 9.3e-50 200.7 195 64.1
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.1e-49 199.5 198 64.1
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 2.1e-49 199.5 198 65.7
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 2.7e-49 199.1 201 63.7
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.7e-49 199.1 186 64.5
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.3e-48 196.8 199 63.3
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.3e-48 196.1 189 59.8
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 5.1e-48 194.9 189 66.7
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-47 193.7 199 63.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.5e-47 193.4 197 61.9
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.5e-47 193.4 194 62.4
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 2.5e-47 192.6 193 62.7
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.3e-47 192.2 188 61.7
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 9.7e-47 190.7 203 59.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.3e-46 190.3 188 61.2
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.2e-46 189.5 200 60.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.2e-46 189.5 188 61.2
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.2e-46 189.5 188 61.2
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 2.2e-46 189.5 194 61.3
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.8e-46 189.1 198 59.6
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.8e-46 189.1 202 60.9
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.8e-46 189.1 198 61.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 2.8e-46 189.1 195 62.1
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.8e-46 188.3 195 63.1
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 6.3e-46 188.0 196 63.3
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.4e-45 186.8 195 61.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 4.1e-45 185.3 203 60.1
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 6.9e-45 184.5 193 61.7
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.2e-44 183.7 191 61.3
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.5e-44 183.3 195 60.5
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.0e-44 183.0 184 62.0
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 3.4e-44 182.2 188 61.2
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 5.9e-44 181.4 195 61.0
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.9e-44 181.4 196 59.2
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 5.9e-44 181.4 193 60.1
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.0e-43 180.6 196 59.2
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.7e-43 179.9 197 58.9
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 5.0e-43 178.3 192 60.4
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 6.5e-43 177.9 186 60.8
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-43 177.6 191 58.6
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.1e-42 177.2 195 59.5
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-42 177.2 188 60.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.4e-42 176.8 194 58.8
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 7.2e-42 174.5 190 60.5
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 9.4e-42 174.1 197 58.9
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.2e-41 173.7 202 56.9
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.6e-41 173.3 194 59.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.7e-41 172.6 193 61.1
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 6.1e-41 171.4 200 59.0
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 7.9e-41 171.0 187 59.4
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 7.9e-41 171.0 187 59.4
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 7.9e-41 171.0 187 59.4
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.8e-40 169.9 191 58.6
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.3e-40 169.5 196 57.1
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.3e-40 169.5 190 57.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 2.3e-40 169.5 199 56.8
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 3.0e-40 169.1 201 56.7
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 8.8e-40 167.5 187 59.4
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 8.8e-40 167.5 187 59.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.8e-40 167.5 187 54.0
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.5e-39 166.8 198 57.1
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.3e-39 165.6 194 58.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 4.3e-39 165.2 196 56.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 5.7e-39 164.9 194 56.2
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 7.4e-39 164.5 195 56.4
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 7.4e-39 164.5 194 56.7
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 9.7e-39 164.1 199 56.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.7e-38 163.3 177 60.5
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.8e-38 162.5 195 55.4
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 2.8e-38 162.5 185 52.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 4.8e-38 161.8 197 55.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 6.3e-38 161.4 195 56.4
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 8.2e-38 161.0 188 57.4
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 8.2e-38 161.0 193 57.5
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.2e-36 157.1 189 55.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 7.7e-36 154.5 179 51.4
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.0e-35 154.1 197 55.3
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.0e-35 154.1 196 54.6
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 5.0e-35 151.8 192 54.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-34 150.2 196 54.1
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.9e-34 149.8 191 55.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 1.9e-34 149.8 192 54.7
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.9e-34 149.8 140 66.4
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.5e-34 149.4 189 56.1
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.2e-34 149.1 183 56.3
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 4.2e-34 148.7 140 66.4
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 4.2e-34 148.7 194 53.6
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 7.2e-34 147.9 190 55.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.2e-33 147.1 194 53.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 2.7e-33 146.0 188 55.3
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 2.7e-33 146.0 188 55.3
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.7e-33 146.0 183 56.3
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 7.9e-33 144.4 192 52.1
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 7.9e-33 144.4 166 53.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.4e-32 143.7 197 50.3
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-32 143.7 191 54.5
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.3e-32 142.9 140 65.0
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 5.7e-31 138.3 179 53.1
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 7.4e-31 137.9 180 50.0
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.7e-30 135.6 160 54.4
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.8e-29 133.3 166 50.6
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 9.1e-29 131.0 192 50.5
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.5e-28 129.0 151 57.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.2e-26 121.3 183 43.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-23 113.6 139 59.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-23 113.2 151 56.3
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 1.3e-22 110.5 208 45.7
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.2e-22 109.8 120 56.7
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-21 107.5 138 50.0
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 3.1e-21 105.9 139 56.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 3.5e-20 102.4 118 50.0
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 5.9e-20 101.7 122 50.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.9e-18 96.7 120 47.5
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 4.7e-17 92.0 179 44.1
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 8.0e-17 91.3 109 58.7
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-16 90.9 112 55.4
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.8e-14 82.8 91 52.7
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.4e-13 79.7 111 46.8
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 7.0e-13 78.2 123 43.1
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.2e-11 73.2 101 46.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.2e-11 73.2 86 48.8
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.5e-10 70.5 129 45.0
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 1.5e-10 70.5 61 77.0
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 4.2e-10 68.9 172 41.9
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 5.2e-08 62.0 68 54.4
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 5.7e-07 58.5 55 56.4


User provided reference genes

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