Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 0.0e+00 1197.6 613 100.0
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 2.6e-243 845.5 617 71.2
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 5.5e-238 827.8 616 69.6
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 1.0e-236 823.5 617 70.5
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 1.0e-236 823.5 617 69.0
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 5.2e-236 821.2 617 71.3
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 2.6e-235 818.9 638 67.7
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.7e-234 816.2 616 68.8
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 1.7e-234 816.2 619 69.1
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 1.4e-233 813.1 618 69.1
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 2.0e-232 809.3 617 68.1
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 3.5e-232 808.5 619 66.9
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 2.2e-231 805.8 617 68.2
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 7.2e-230 800.8 614 68.7
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 8.0e-229 797.3 617 67.6
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.8e-228 796.2 621 67.5
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 6.8e-228 794.3 617 67.1
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.2e-227 793.5 617 67.4
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 2.0e-227 792.7 617 67.1
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 2.0e-227 792.7 617 67.4
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 2.8e-226 788.9 606 68.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 2.8e-226 788.9 617 66.8
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 1.1e-225 786.9 623 65.3
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 9.1e-225 783.9 617 66.3
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 9.1e-225 783.9 617 66.9
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 2.7e-224 782.3 617 65.8
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 7.7e-224 780.8 617 66.6
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.7e-223 779.6 616 65.9
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 3.8e-223 778.5 646 63.9
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 5.0e-223 778.1 617 65.8
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 9.5e-222 773.9 616 65.4
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.0e-220 770.4 617 65.5
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 3.0e-220 768.8 616 63.8
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 2.2e-218 762.7 612 64.9
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 3.7e-218 761.9 617 63.4
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 6.3e-218 761.1 618 66.5
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 4.1e-217 758.4 617 63.2
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 9.2e-217 757.3 617 63.2
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 8.6e-215 750.7 612 62.1
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 6.8e-212 741.1 616 64.1
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 2.2e-210 736.1 543 70.0
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 6.4e-210 734.6 617 62.9
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 2.5e-206 722.6 614 61.6
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 5.6e-206 721.5 612 61.8
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 7.3e-206 721.1 626 61.2
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 2.1e-205 719.5 618 63.1
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.4e-204 716.8 617 62.2
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.2e-203 713.8 617 60.1
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 2.6e-203 712.6 616 60.7
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 1.7e-202 709.9 619 62.5
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 3.2e-201 705.7 617 60.0
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 3.5e-200 702.2 615 59.7
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 1.7e-199 699.9 616 59.3
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 2.3e-199 699.5 710 55.2
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 8.6e-199 697.6 620 59.8
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 3.3e-198 695.7 613 57.4
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 5.6e-198 694.9 617 59.0
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 5.6e-198 694.9 617 58.7
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 9.5e-198 694.1 618 59.4
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 1.2e-197 693.7 617 58.8
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 2.3e-196 689.5 652 57.4
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 9.9e-195 684.1 611 59.2
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 2.3e-191 672.9 611 56.5
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 3.9e-191 672.2 599 60.3
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 2.5e-190 669.5 603 58.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 1.6e-189 666.8 605 57.4
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 6.0e-184 648.3 620 54.4
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.7e-183 646.7 546 61.4
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 2.3e-183 646.4 565 62.3
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 5.1e-183 645.2 660 56.4
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 8.7e-183 644.4 620 56.3
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.5e-182 642.9 617 54.9
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 4.8e-181 638.6 619 54.6
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 7.1e-177 624.8 673 52.7
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.6e-176 623.6 567 56.6
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 2.1e-173 613.2 697 49.2
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 1.2e-171 607.4 619 54.1
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 2.9e-170 602.8 624 52.4
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 6.0e-168 595.1 605 51.2
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.3e-165 587.4 569 55.9
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.3e-157 560.8 723 47.0
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 4.1e-156 555.8 447 63.5
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 8.7e-151 538.1 482 59.8
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 2.2e-149 533.5 448 62.3
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.9e-137 493.8 563 50.4
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 7.2e-129 465.3 614 42.8
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.1e-128 463.8 613 43.4
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 9.7e-126 454.9 594 45.8
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.7e-125 454.1 620 46.1
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.4e-124 450.3 616 41.2
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.4e-124 450.3 616 41.2
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 3.8e-122 443.0 615 45.4
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 8.0e-120 435.3 366 62.8
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 2.3e-119 433.7 322 69.6
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.6e-115 421.0 361 61.5
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 3.5e-115 419.9 317 69.7
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 6.1e-104 382.5 405 51.6
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 2.3e-103 380.6 349 55.3
HPP92_021631 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.7e-101 374.4 355 55.5
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 1.2e-94 351.7 291 64.9
Thhalv10017610m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.2e-83 315.1 343 52.2
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.6e-80 304.7 573 34.9
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 2.5e-73 280.8 623 30.3
Peaxi162Scf00420g00935 Petunia axillaris HOM05D001087 ORTHO05D005406 2.5e-73 280.8 276 55.1
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 4.7e-72 276.6 284 49.6
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 6.2e-72 276.2 237 62.9
BcaC05g25411 Brassica carinata HOM05D001087 ORTHO05D005406 6.0e-67 259.6 318 47.8
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 5.6e-65 253.1 257 54.5
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 1.7e-61 241.5 194 62.4
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 6.4e-61 239.6 216 60.6
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.1e-47 195.7 182 58.2
Nitab4.5_0000519g0380 Nicotiana tabacum HOM05D001087 ORTHO05D005406 4.0e-47 193.7 187 55.6
Glyma.04G126700 Glycine max HOM05D001087 ORTHO05D005406 2.7e-43 181.0 136 65.4
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.1e-39 169.1 145 59.3
Glyma.09G128151 Glycine max HOM05D001087 ORTHO05D005406 9.0e-39 166.0 126 65.1
Nitab4.5_0005199g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.4e-38 164.1 218 42.7
RcHm_v2.0_Chr7g0218031 Rosa chinensis HOM05D001087 ORTHO05D005406 4.2e-36 157.1 149 57.7
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.4e-28 132.1 110 60.0
Nitab4.5_0000136g0080 Nicotiana tabacum HOM05D001087 ORTHO05D005406 9.4e-28 129.4 259 35.5
Lj7C620T11 Lonicera japonica HOM05D001087 ORTHO05D005406 1.1e-25 122.5 107 63.6
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.0e-25 121.7 158 45.6
RcHm_v2.0_Chr1g0366171 Rosa chinensis HOM05D001087 ORTHO05D017953 5.0e-21 107.1 129 47.3
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 8.5e-21 106.3 49 100.0
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 1.8e-18 98.6 87 57.5
Psat0s3545g0040 Pisum sativum HOM05D001087 ORTHO05D005406 6.7e-18 96.7 79 64.6
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 1.5e-17 95.5 91 59.3
C05p12870 Brassica napus HOM05D001087 ORTHO05D005406 1.7e-16 92.0 88 56.8
BolC5t30034H Brassica oleracea HOM05D001087 ORTHO05D005406 1.7e-16 92.0 88 56.8
Peaxi162Scf00420g00936 Petunia axillaris HOM05D001087 ORTHO05D005406 4.5e-14 84.0 53 75.5
Os11g0543800 Oryza sativa ssp. japonica HOM05D001087 ORTHO05D005406 5.0e-13 80.5 71 53.5
HanXRQChr13g0414341 Helianthus annuus HOM05D001087 ORTHO05D005406 3.2e-12 77.8 83 49.4
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.5e-12 77.0 50 74.0
BraA06t24070Z Brassica rapa HOM05D001087 ORTHO05D005406 4.7e-11 73.9 79 49.4
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 4.7e-11 73.9 80 51.2
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 5.7e-09 67.0 69 46.4
FvH4_4g08541 Fragaria vesca HOM05D011771 ORTHO05D014214 3.7e-08 64.3 54 64.8
FvH4_6g39362 Fragaria vesca HOM05D011771 ORTHO05D014214 3.1e-07 61.2 54 63.0


User provided reference genes

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