Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.8e-191 671.8 341 100.0
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.1e-182 641.3 341 96.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.9e-110 403.3 340 60.9
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.8e-106 389.4 336 58.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.4e-105 387.1 341 58.9
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 4.0e-105 385.6 337 59.6
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 6.9e-105 384.8 337 60.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 5.8e-104 381.7 337 60.2
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 1.7e-103 380.2 337 59.6
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.9e-103 379.4 335 59.1
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.4e-103 377.9 337 57.9
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.9e-102 376.7 337 57.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 2.4e-102 376.3 335 57.6
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-102 376.3 337 58.2
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.2e-102 375.9 337 57.6
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 9.3e-102 374.4 337 57.6
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.2e-101 374.0 340 57.9
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.1e-101 373.2 341 57.2
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 6.0e-101 371.7 336 55.1
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.8e-100 370.2 338 58.3
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.3e-100 369.8 337 56.4
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-100 369.4 335 56.7
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 5.1e-100 368.6 335 55.8
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 6.7e-100 368.2 337 57.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 6.7e-100 368.2 335 56.1
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.7e-100 367.9 335 56.4
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 2.5e-99 366.3 338 55.3
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 2.8e-98 362.8 338 54.1
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.1e-97 360.9 342 55.3
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.8e-97 360.1 337 56.1
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.8e-97 360.1 337 54.0
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 3.1e-97 359.4 341 56.6
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 5.3e-97 358.6 335 54.3
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 9.0e-97 357.8 337 54.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 3.4e-96 355.9 337 53.1
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.5e-96 355.5 333 55.6
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 7.6e-96 354.8 338 54.7
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 2.9e-95 352.8 335 54.6
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 4.9e-95 352.1 315 55.2
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 6.5e-95 351.7 341 54.0
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 6.5e-95 351.7 337 52.8
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 6.5e-95 351.7 335 54.3
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 8.4e-95 351.3 336 52.7
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 8.4e-95 351.3 335 54.6
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.9e-94 350.1 335 54.6
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.9e-94 350.1 335 53.7
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 7.1e-94 348.2 341 54.5
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 9.3e-94 347.8 336 55.1
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 9.3e-94 347.8 366 50.5
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 8.7e-92 341.3 341 53.1
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 8.7e-92 341.3 361 52.9
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.5e-91 340.5 322 55.9
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.9e-91 340.1 337 52.2
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.7e-91 338.6 335 52.2
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 2.1e-90 336.7 340 52.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.7e-90 335.9 334 50.9
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 4.8e-90 335.5 343 50.7
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.8e-90 335.5 355 50.4
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 6.3e-90 335.1 369 50.4
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.4e-89 334.0 336 52.4
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 4.1e-89 332.4 334 50.6
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.2e-88 330.9 336 52.4
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 2.0e-88 330.1 334 50.6
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 2.6e-88 329.7 337 52.5
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.6e-88 328.2 334 49.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.8e-87 325.9 339 51.9
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.6e-85 320.5 335 51.9
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 3.6e-85 319.3 334 53.3
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 4.6e-85 318.9 357 50.7
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 6.1e-85 318.5 339 51.6
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.8e-84 317.0 342 51.2
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 3.9e-84 315.8 334 52.1
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.7e-84 315.1 335 50.7
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 8.7e-84 314.7 346 49.7
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.5e-83 313.9 334 52.1
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.9e-83 313.5 361 49.6
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.6e-82 310.5 335 51.9
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.2e-82 310.1 334 50.9
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.7e-82 309.3 336 50.9
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 2.4e-81 306.6 368 47.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 5.3e-81 305.4 333 50.5
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.0e-79 301.2 334 51.2
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.2e-79 300.1 333 49.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 5.0e-79 298.9 335 49.3
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.5e-78 296.6 333 48.9
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 2.5e-78 296.6 333 49.2
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.6e-77 293.9 333 48.6
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 6.1e-77 292.0 331 47.1
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.4e-76 290.8 335 45.7
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 5.1e-76 288.9 333 48.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 2.6e-75 286.6 325 48.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 7.4e-75 285.0 287 51.9
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 6.3e-74 282.0 300 53.7
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.3e-74 282.0 267 56.6
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.0e-71 274.6 306 47.7
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.8e-71 272.7 195 76.9
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.5e-70 270.0 355 45.1
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 6.1e-69 265.4 334 46.7
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 6.7e-68 261.9 163 84.7
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 8.8e-68 261.5 250 56.0
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 9.7e-67 258.1 321 43.9
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.7e-66 257.3 332 44.3
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.7e-55 220.7 314 42.4
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 3.2e-54 216.5 342 40.6
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.7e-53 213.4 337 39.8
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.8e-52 210.7 333 37.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 5.2e-52 209.1 343 37.3
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 4.1e-49 199.5 322 37.9
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 6.1e-45 185.7 352 36.1
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 3.7e-42 176.4 208 46.6
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.3e-39 167.9 205 47.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 3.6e-37 159.8 188 43.6
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.4e-33 146.0 188 47.9
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.2e-29 134.8 136 52.2
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.6e-29 134.4 157 46.5
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.6e-29 134.4 157 46.5
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.3e-26 124.8 346 30.3
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 6.4e-26 122.5 123 46.3
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 3.3e-22 110.2 309 28.2
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 5.2e-20 102.8 143 40.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 8.9e-20 102.1 162 39.5
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.4e-19 100.1 109 48.6
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.2e-18 97.4 72 68.1
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.3e-14 83.6 73 54.8
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.3e-14 83.6 108 42.6
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.3e-07 61.6 36 75.0


User provided reference genes

Program Settings