Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01839 Eucalyptus grandis HOM05D001808 ORTHO05D001747 1.1e-37 159.5 78 100.0
Eucgr.G01846 Eucalyptus grandis HOM05D001808 ORTHO05D001747 5.9e-36 153.7 78 96.2
PGR142G2648 Punica granatum HOM05D001808 ORTHO05D001747 1.2e-12 76.3 78 51.3
GSVIVG01023937001 Vitis vinifera HOM05D001808 ORTHO05D001747 1.2e-12 76.3 70 55.7
AUR62027139 Chenopodium quinoa HOM05D001808 ORTHO05D001747 7.8e-12 73.6 67 50.7
PGR042G0899 Punica granatum HOM05D001808 ORTHO05D001747 1.3e-11 72.8 78 50.0
AUR62012939 Chenopodium quinoa HOM05D001808 ORTHO05D001747 1.7e-11 72.4 67 49.3
Lj9C405T4 Lonicera japonica HOM05D001808 ORTHO05D001747 1.7e-11 72.4 73 53.4
Hma1.2p1_0032F.1_g018860 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 6.6e-11 70.5 77 53.2
vmacro17289 Vaccinium macrocarpon HOM05D001808 ORTHO05D001747 8.6e-11 70.1 68 52.9
GSVIVG01023936001 Vitis vinifera HOM05D001808 ORTHO05D001747 1.1e-10 69.7 81 49.4
Actinidia26335 Actinidia chinensis HOM05D001808 ORTHO05D001747 2.5e-10 68.6 80 50.0
FvH4_2g16381 Fragaria vesca HOM05D001808 ORTHO05D001747 2.5e-10 68.6 76 50.0
MD00G1083800 Malus domestica HOM05D001808 ORTHO05D001747 3.3e-10 68.2 83 53.0
CSS0018974 Camellia sinensis var. sinensis HOM05D001808 ORTHO05D001747 4.3e-10 67.8 80 56.2
CiPaw.05G089300 Carya illinoinensis HOM05D001808 ORTHO05D001747 4.3e-10 67.8 74 44.6
FAN24G0071 Fragaria x ananassa HOM05D000807 ORTHO05D000662 4.3e-10 67.8 66 53.0
CiPaw.05G089500 Carya illinoinensis HOM05D001808 ORTHO05D001747 7.3e-10 67.0 74 43.2
CiPaw.05G089600 Carya illinoinensis HOM05D001808 ORTHO05D001747 7.3e-10 67.0 74 43.2
Thecc.02G046800 Theobroma cacao HOM05D001808 ORTHO05D001747 7.3e-10 67.0 80 52.5
Cc09_g10620 Coffea canephora HOM05D001808 ORTHO05D001747 1.2e-09 66.2 76 48.7
MELO3C013264.2 Cucumis melo HOM05D001808 ORTHO05D001747 2.1e-09 65.5 44 68.2
CsaV3_7G001750 Cucumis sativus L. HOM05D000807 ORTHO05D000662 2.1e-09 65.5 44 68.2
Hma1.2p1_0271F.1_g109010 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 2.1e-09 65.5 76 48.7
Hma1.2p1_0271F.1_g109025 Hydrangea macrophylla HOM05D001808 ORTHO05D001747 2.1e-09 65.5 76 48.7
RcHm_v2.0_Chr6g0280171 Rosa chinensis HOM05D001808 ORTHO05D001747 2.8e-09 65.1 77 51.9
Potri.004G183500 Populus trichocarpa HOM05D001808 ORTHO05D001747 6.2e-09 63.9 78 47.4
Cpa.g.sc20.188 Carica papaya HOM05D001808 ORTHO05D001747 8.0e-09 63.5 78 47.4
Migut.B00019 Erythranthe guttata HOM05D001808 ORTHO05D001747 8.0e-09 63.5 65 53.8
FAN27G0176 Fragaria x ananassa HOM05D000807 ORTHO05D000662 8.0e-09 63.5 64 51.6
SGA_v2.0_scaffold32G13339 Striga asiatica HOM05D001808 ORTHO05D001747 8.0e-09 63.5 53 52.8
Sabra09G0111100 Salix brachista HOM05D001808 ORTHO05D001747 1.0e-08 63.2 84 46.4
Ah.01g007730 Amaranthus hybridus HOM05D001808 ORTHO05D001747 1.4e-08 62.8 84 45.2
Nn6g31739 Nelumbo nucifera HOM05D001808 ORTHO05D001747 1.4e-08 62.8 79 50.6
Gohir.A01G173800 Gossypium hirsutum HOM05D001808 ORTHO05D001747 1.8e-08 62.4 69 47.8
TAR381G1553 Trochodendron aralioides HOM05D001808 ORTHO05D001747 2.3e-08 62.0 74 45.9
EL10Ac9g21269 Beta vulgaris HOM05D001808 ORTHO05D001747 3.1e-08 61.6 43 55.8
TWI79G1212 Tripterygium wilfordii HOM05D001808 ORTHO05D001747 4.0e-08 61.2 81 43.2
Gohir.A12G033900 Gossypium hirsutum HOM05D001808 ORTHO05D001747 5.2e-08 60.8 83 44.6
Gorai.008G040500 Gossypium raimondii HOM05D001808 ORTHO05D001747 6.8e-08 60.5 83 44.6
Sed0010359 Sechium edule HOM05D001808 ORTHO05D001747 6.8e-08 60.5 44 63.6
Ciclev10028533m.g Citrus clementina HOM05D001808 ORTHO05D001747 8.9e-08 60.1 77 48.1
Nitab4.5_0016563g0010 Nicotiana tabacum HOM05D001808 ORTHO05D001747 8.9e-08 60.1 80 43.8
Sabra04G0123400 Salix brachista HOM05D001808 ORTHO05D001747 8.9e-08 60.1 72 47.2
Gohir.D12G038600 Gossypium hirsutum HOM05D001808 ORTHO05D001747 1.2e-07 59.7 85 43.5
Manes.04G065032 Manihot esculenta HOM05D001808 ORTHO05D001747 1.2e-07 59.7 78 44.9
Peaxi162Scf00362g00249 Petunia axillaris HOM05D001808 ORTHO05D001747 1.2e-07 59.7 80 43.8
PGSC0003DMG400018637 Solanum tuberosum HOM05D001808 ORTHO05D001747 1.2e-07 59.7 74 45.9
CiPaw.05G089700 Carya illinoinensis HOM05D001808 ORTHO05D001747 1.5e-07 59.3 113 33.6
Hund06153 Selenicereus undatus HOM05D001808 ORTHO05D001747 2.6e-07 58.5 69 50.7
Duzib248G0108 Durio zibethinus HOM05D001808 ORTHO05D001747 3.4e-07 58.2 78 44.9
Nitab4.5_0000783g0270 Nicotiana tabacum HOM05D001808 ORTHO05D001747 3.4e-07 58.2 81 44.4
Eucgr.I01508 Eucalyptus grandis HOM05D001808 ORTHO05D001747 4.4e-07 57.8 84 44.0
Psat7g088120 Pisum sativum HOM05D001808 ORTHO05D001747 4.4e-07 57.8 90 42.2
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 5.8e-07 57.4 80 46.2
Duzib132G0140 Durio zibethinus HOM05D001808 ORTHO05D001747 5.8e-07 57.4 70 47.1
Duzib132G1088 Durio zibethinus HOM05D001808 ORTHO05D001747 5.8e-07 57.4 70 47.1
Gorai.002G205600 Gossypium raimondii HOM05D001808 ORTHO05D001747 5.8e-07 57.4 76 46.1
Oeu006125.1 Olea europaea HOM05D001808 ORTHO05D001747 5.8e-07 57.4 72 45.8
Potri.009G143300 Populus trichocarpa HOM05D001808 ORTHO05D001747 5.8e-07 57.4 49 53.1
Prupe.8G176700 Prunus persica HOM05D001808 ORTHO05D001747 5.8e-07 57.4 85 42.4
TPR.G31243 Trifolium pratense HOM05D001808 ORTHO05D001747 5.8e-07 57.4 80 42.5
Atru.chr5.3494 Acer truncatum HOM05D000807 ORTHO05D000662 7.5e-07 57.0 44 65.9
CAN.G1235.14 Capsicum annuum HOM05D001808 ORTHO05D001747 7.5e-07 57.0 70 47.1
Cfa005336 Carpinus fangiana HOM05D001808 ORTHO05D001747 7.5e-07 57.0 45 57.8
Aa31LG8G14520 Aethionema arabicum HOM05D001808 ORTHO05D001747 9.8e-07 56.6 49 59.2
Duzib132G0990 Durio zibethinus HOM05D001808 ORTHO05D001747 9.8e-07 56.6 70 47.1
Gohir.D01G165200 Gossypium hirsutum HOM05D001808 ORTHO05D001747 9.8e-07 56.6 70 45.7
FAN24G2736 Fragaria x ananassa HOM05D000807 ORTHO05D000662 1.3e-06 56.2 44 61.4
Sed0024733 Sechium edule HOM05D001808 ORTHO05D001747 1.3e-06 56.2 44 59.1
MSTRG.16951 Avicennia marina HOM05D001808 ORTHO05D001747 1.7e-06 55.8 73 45.2
Atru.chr5.3496 Acer truncatum HOM05D001808 ORTHO05D001747 2.2e-06 55.5 73 46.6
CANSAT25G1209 Cannabis sativa HOM05D001808 ORTHO05D001747 2.2e-06 55.5 48 54.2
QL11p054553 Quercus lobata HOM05D001808 ORTHO05D001747 2.9e-06 55.1 79 40.5
Solyc01g112080.3 Solanum lycopersicum HOM05D001808 ORTHO05D001747 2.9e-06 55.1 68 47.1
Sopen01g054130 Solanum pennellii HOM05D001808 ORTHO05D001747 2.9e-06 55.1 68 47.1
Ah.01g023640 Amaranthus hybridus HOM05D001808 ORTHO05D001747 3.7e-06 54.7 77 44.2
Atru.chr5.3498 Acer truncatum HOM05D001808 ORTHO05D001747 4.9e-06 54.3 73 46.6
Sp3g30450 Schrenkiella parvula HOM05D001808 ORTHO05D001747 4.9e-06 54.3 68 45.6
THA.LOC104807395 Tarenaya hassleriana HOM05D001808 ORTHO05D001747 4.9e-06 54.3 76 44.7
A06p34170 Brassica napus HOM05D001808 ORTHO05D001747 8.3e-06 53.5 36 72.2
BraA06t26349Z Brassica rapa HOM05D001808 ORTHO05D001747 8.3e-06 53.5 36 72.2
QL11p054397 Quercus lobata HOM05D001808 ORTHO05D001747 8.3e-06 53.5 83 38.6


User provided reference genes

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