Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.4e-36 155.6 70 100.0
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.8e-28 128.6 60 95.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.4e-28 128.3 60 91.7
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.1e-28 127.5 60 93.3
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.3e-28 127.1 60 91.7
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.9e-28 126.7 60 93.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 6.9e-28 126.7 60 91.7
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 9.1e-28 126.3 60 91.7
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 9.1e-28 126.3 60 91.7
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 9.1e-28 126.3 60 90.0
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.2e-27 125.9 60 90.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.2e-27 125.9 60 91.7
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.2e-27 125.9 60 90.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.5e-27 125.6 60 91.7
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.0e-27 125.2 60 91.7
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.0e-27 125.2 60 91.7
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.6e-27 124.8 60 90.0
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 3.4e-27 124.4 60 91.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.4e-27 124.4 58 93.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.4e-27 124.4 60 90.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 4.5e-27 124.0 60 86.7
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 4.5e-27 124.0 60 88.3
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 4.5e-27 124.0 60 91.7
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.9e-27 123.6 60 86.7
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.9e-27 123.6 58 89.7
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.9e-27 123.6 58 89.7
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.9e-27 123.6 58 89.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 5.9e-27 123.6 60 88.3
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 7.7e-27 123.2 60 88.3
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.0e-26 122.9 58 87.9
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.0e-26 122.9 56 94.6
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.3e-26 122.5 60 86.7
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.7e-26 122.1 60 90.0
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.7e-26 122.1 58 87.9
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 2.9e-26 121.3 60 88.3
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.8e-26 120.9 60 85.0
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.8e-26 120.9 60 85.0
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.8e-26 120.9 60 85.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.8e-26 120.9 60 85.0
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.0e-26 120.6 60 85.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.0e-26 120.6 58 87.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.5e-26 120.2 60 85.0
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 6.5e-26 120.2 60 85.0
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.5e-26 119.8 60 85.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 8.5e-26 119.8 63 79.4
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.1e-25 119.4 60 83.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.1e-25 119.4 62 82.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.1e-25 119.4 60 86.7
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.4e-25 119.0 58 87.9
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.9e-25 118.6 60 86.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 1.9e-25 118.6 58 84.5
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.5e-25 118.2 60 83.3
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.5e-25 118.2 57 87.7
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.2e-25 117.5 56 85.7
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.2e-25 117.5 60 86.7
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.2e-25 117.5 57 87.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 5.5e-25 117.1 57 84.2
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 5.5e-25 117.1 62 77.4
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 7.2e-25 116.7 58 81.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.2e-25 116.7 57 84.2
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 7.2e-25 116.7 57 84.2
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 9.4e-25 116.3 57 82.5
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.2e-24 115.9 59 83.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.2e-24 115.9 57 84.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.6e-24 115.5 57 82.5
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.1e-24 115.2 58 84.5
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.1e-24 115.2 58 84.5
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.6e-24 114.4 59 84.7
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 4.7e-24 114.0 58 81.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 4.7e-24 114.0 58 81.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 4.7e-24 114.0 58 81.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 4.7e-24 114.0 58 81.0
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.7e-24 114.0 62 80.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.7e-24 114.0 60 81.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 6.1e-24 113.6 60 80.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.9e-24 113.2 57 82.5
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.9e-24 113.2 57 82.5
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 7.9e-24 113.2 58 82.8
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.0e-23 112.8 58 81.0
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.0e-23 112.8 58 81.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.4e-23 112.5 58 79.3
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.4e-23 112.5 59 81.4
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.4e-23 112.5 56 82.1
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.8e-23 112.1 64 76.6
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.8e-23 112.1 58 79.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.8e-23 112.1 60 80.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 2.3e-23 111.7 58 79.3
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 3.0e-23 111.3 59 79.7
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.0e-23 111.3 60 81.7
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 3.9e-23 110.9 60 78.3
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 3.9e-23 110.9 58 77.6
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 3.9e-23 110.9 58 77.6
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 3.9e-23 110.9 58 77.6
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 3.9e-23 110.9 58 77.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.8e-23 109.8 59 78.0
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.1e-22 109.4 60 76.7
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 2.0e-22 108.6 58 77.6
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-22 108.2 58 77.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 7.4e-22 106.7 59 78.0
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 9.7e-22 106.3 58 72.4
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.7e-21 105.5 57 77.2
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.7e-21 105.5 57 75.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 3.1e-20 101.3 54 79.6
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 5.3e-20 100.5 59 72.9
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.2e-19 99.4 46 89.1
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.3e-18 95.9 46 87.0
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.2e-18 95.1 59 64.4
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.8e-18 94.4 59 71.2
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.8e-18 94.4 59 71.2
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.0e-18 94.0 47 80.9
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 8.5e-18 93.2 46 84.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.1e-17 92.8 51 74.5
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.5e-17 91.7 56 67.9
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.2e-17 91.3 51 76.5
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 9.4e-17 89.7 47 78.7
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 9.4e-17 89.7 47 76.6
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-16 89.4 53 66.0
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 4.7e-16 87.4 46 78.3
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.0e-15 84.7 57 59.6
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 3.9e-15 84.3 42 85.7
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.1e-14 82.8 56 60.7
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.1e-14 82.8 47 70.2
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.5e-14 82.4 57 57.9
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.3e-14 81.3 47 70.2
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.3e-13 79.3 72 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.1e-12 74.3 67 46.3
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.1e-12 73.2 57 59.6
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-10 67.4 57 47.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 6.5e-10 67.0 33 87.9
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.7e-08 61.6 50 48.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 6.1e-08 60.5 51 51.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.0e-07 58.2 46 50.0
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 3.0e-07 58.2 27 88.9
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 6.7e-07 57.0 25 96.0
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.4e-06 54.3 27 77.8


User provided reference genes

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