Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.1e-72 276.6 139 100.0
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 2.2e-25 119.4 93 65.6
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 1.1e-24 117.1 140 51.4
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.4e-24 116.7 94 66.0
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 2.4e-24 115.9 91 64.8
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 7.1e-24 114.4 93 62.4
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 7.1e-24 114.4 94 63.8
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 7.1e-24 114.4 94 63.8
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 7.1e-24 114.4 94 64.9
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 9.2e-24 114.0 94 63.8
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 2.7e-23 112.5 93 64.5
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 6.0e-23 111.3 94 62.8
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.3e-22 110.2 94 63.8
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.9e-22 108.6 93 61.3
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 5.1e-22 108.2 90 63.3
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 5.1e-22 108.2 100 55.0
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.6e-22 107.8 95 60.0
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 6.6e-22 107.8 95 58.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.5e-21 106.7 93 61.3
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.9e-21 106.3 95 58.9
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.9e-21 106.3 95 58.9
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.9e-21 106.3 95 58.9
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-21 105.5 94 58.5
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.3e-21 105.1 95 62.1
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 7.3e-21 104.4 95 61.1
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.8e-20 102.4 95 58.9
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 6.2e-20 101.3 93 57.0
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.1e-19 100.5 94 59.6
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.1e-19 100.5 94 59.6
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.8e-19 99.8 76 67.1
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 6.8e-19 97.8 84 58.3
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 8.9e-19 97.4 95 55.8
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 4.4e-18 95.1 85 57.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 5.8e-18 94.7 83 57.8
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 9.9e-18 94.0 85 61.2
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 9.9e-18 94.0 96 52.1
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 1.3e-17 93.6 93 53.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.7e-17 93.2 98 55.1
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.2e-17 92.8 91 51.6
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.9e-17 92.4 92 54.3
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.4e-16 90.1 98 54.1
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.4e-16 90.1 98 54.1
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 4.2e-16 88.6 94 55.3
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.6e-15 86.7 103 55.3
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.1e-15 86.3 98 46.9
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 2.1e-15 86.3 86 53.5
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 2.7e-15 85.9 81 55.6
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.7e-15 85.9 80 56.2
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 6.0e-15 84.7 83 55.4
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 7.8e-15 84.3 94 54.3
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.0e-14 84.0 96 55.2
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.7e-14 83.2 83 56.6
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.1e-14 81.6 74 62.2
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 8.7e-14 80.9 103 51.5
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.1e-13 80.5 80 52.5
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.9e-13 79.7 61 62.3
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.5e-13 79.3 121 42.1
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 3.3e-13 79.0 113 44.2
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 4.3e-13 78.6 99 46.5
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.6e-13 77.4 70 61.4
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 1.3e-12 77.0 109 43.1
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 1.3e-12 77.0 91 51.6
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.1e-12 76.3 113 41.6
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 2.8e-12 75.9 61 60.7
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 3.6e-12 75.5 115 40.9
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 3.6e-12 75.5 101 42.6
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 3.6e-12 75.5 89 52.8
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 4.8e-12 75.1 113 40.7
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 4.8e-12 75.1 113 40.7
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 6.2e-12 74.7 114 40.4
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.1e-12 74.3 62 61.3
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 8.1e-12 74.3 62 61.3
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 1.8e-11 73.2 99 43.4
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 1.8e-11 73.2 99 43.4
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 2.4e-11 72.8 81 50.6
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 3.1e-11 72.4 99 42.4
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 4.0e-11 72.0 100 42.0
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 4.0e-11 72.0 100 42.0
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 6.9e-11 71.2 101 42.6
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 6.9e-11 71.2 71 54.9
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 2.4e-08 62.8 94 42.6
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.2e-08 62.4 44 56.8
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 9.3e-08 60.8 47 55.3
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.2e-07 60.5 58 46.6
Solyc06g066420.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 1.2e-07 60.5 117 35.9
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 4.6e-07 58.5 63 47.6
Sopen06g024710 Solanum pennellii HOM05D002019 ORTHO05D002150 7.9e-07 57.8 117 35.0
PGSC0003DMG400016497 Solanum tuberosum HOM05D002019 ORTHO05D002150 7.9e-07 57.8 103 35.0
Lj4P371T13 Lonicera japonica HOM05D002019 ORTHO05D002150 1.3e-06 57.0 80 38.8
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 1.3e-06 57.0 52 48.1
CDE05G2539 Ceratophyllum demersum HOM05D002019 ORTHO05D002150 1.7e-06 56.6 76 43.4
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 1.7e-06 56.6 64 40.6
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 2.3e-06 56.2 91 44.0
CAN.G1759.7 Capsicum annuum HOM05D002019 ORTHO05D002150 3.0e-06 55.8 135 31.1
MELO3C015423.2 Cucumis melo HOM05D002019 ORTHO05D002150 3.0e-06 55.8 86 34.9
Nitab4.5_0006022g0010 Nicotiana tabacum HOM05D002019 ORTHO05D002150 3.0e-06 55.8 100 38.0
Cpa.g.sc25.25 Carica papaya HOM05D002019 ORTHO05D002150 3.9e-06 55.5 52 48.1
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 5.1e-06 55.1 63 46.0
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 5.1e-06 55.1 50 52.0
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 5.1e-06 55.1 61 52.5
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 6.6e-06 54.7 124 31.5
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.6e-06 54.7 87 36.8
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 6.6e-06 54.7 52 51.9
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 8.7e-06 54.3 58 51.7
CsaV3_1G039920 Cucumis sativus L. HOM05D002019 ORTHO05D002150 8.7e-06 54.3 83 33.7
Eucgr.C03715 Eucalyptus grandis HOM05D002019 ORTHO05D002150 8.7e-06 54.3 76 40.8
Os02g0227100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D002150 8.7e-06 54.3 73 41.1


User provided reference genes

Program Settings