Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 0.0e+00 1841.2 943 100.0
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 7.0e-123 446.0 778 38.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.9e-120 438.0 764 37.6
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.5e-113 412.9 778 40.4
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.1e-111 407.9 760 39.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.0e-110 405.6 766 38.0
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.0e-110 405.6 765 39.5
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.5e-109 401.7 762 36.7
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.7e-108 398.3 762 36.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.8e-108 397.5 762 36.5
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 8.3e-108 396.0 764 36.4
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.1e-107 393.7 769 37.1
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.0e-105 389.0 765 35.9
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.2e-104 384.0 811 35.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 7.2e-104 382.9 759 36.5
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.2e-102 376.7 749 36.6
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 8.8e-102 375.9 757 34.9
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 2.4e-99 367.9 773 36.9
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.7e-98 364.4 744 35.2
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.8e-95 354.4 738 37.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.8e-94 351.7 803 34.7
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.0e-94 350.9 767 34.7
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 8.9e-94 349.4 762 36.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 6.3e-92 343.2 755 35.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.5e-88 332.0 392 47.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.8e-87 327.8 804 34.3
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 8.0e-87 326.2 764 33.8
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.4e-86 325.5 768 35.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 6.8e-86 323.2 798 33.5
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 2.6e-85 321.2 769 35.1
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.4e-83 314.7 770 34.4
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 6.6e-81 306.6 776 32.6
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.2e-77 295.8 777 32.0
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.0e-77 295.0 789 33.6
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.2e-76 291.6 760 33.6
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.9e-76 290.4 766 32.8
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-75 288.9 764 32.5
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.0e-73 281.2 754 33.8
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 6.6e-73 280.0 753 32.3
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.3e-72 277.3 753 34.0
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 9.5e-72 276.2 769 33.3
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.1e-70 272.7 738 32.1
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.4e-70 272.3 510 38.8
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.1e-70 271.2 750 33.7
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.2e-69 269.2 765 30.8
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.3e-68 265.8 575 35.0
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.1e-67 260.8 401 41.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 7.1e-67 260.0 765 31.1
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 4.3e-64 250.8 771 32.4
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.6e-64 250.4 401 40.1
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.8e-62 243.4 822 28.2
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 5.8e-61 240.4 597 35.7
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.7e-60 238.8 509 36.3
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.4e-59 235.7 481 33.3
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.9e-59 235.3 478 36.6
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.2e-58 232.6 789 27.9
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.2e-58 232.6 750 30.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.3e-57 229.2 758 30.3
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.3e-57 229.2 784 29.7
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 3.9e-57 227.6 755 30.3
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.1e-56 226.1 752 29.1
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.5e-56 225.7 744 29.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.5e-56 225.7 779 29.4
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.9e-56 225.3 403 37.2
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 3.3e-56 224.6 525 33.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.1e-55 221.9 779 30.3
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 4.8e-55 220.7 581 31.2
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.4e-54 219.2 782 29.8
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 4.0e-54 217.6 570 32.3
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.8e-53 213.8 571 32.2
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 9.9e-53 213.0 482 33.2
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.9e-52 210.7 569 30.8
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 8.4e-52 209.9 464 34.1
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.4e-51 209.1 517 32.3
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 9.6e-48 196.4 655 29.6
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 6.2e-47 193.7 389 37.0
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.1e-46 193.0 466 32.2
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.8e-46 192.2 494 31.6
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.1e-46 191.4 500 33.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.1e-40 172.9 356 36.2
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 3.3e-40 171.4 665 28.9
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.6e-40 170.6 425 32.9
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.1e-38 166.4 429 33.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.4e-38 165.2 511 29.2
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.3e-38 164.1 211 43.6
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.6e-34 152.5 524 28.2
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.6e-34 151.0 565 26.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 4.3e-32 144.4 369 33.6
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 4.3e-32 144.4 234 38.9
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.8e-31 141.7 317 35.3
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 4.8e-31 141.0 356 35.1
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 8.2e-31 140.2 406 30.0
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.1e-30 139.8 314 35.4
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.1e-30 137.9 398 30.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 9.0e-30 136.7 475 32.0
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.4e-29 134.8 363 32.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 5.9e-29 134.0 449 29.0
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.7e-28 132.5 368 32.6
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 8.4e-28 130.2 217 38.2
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.9e-27 129.0 218 39.9
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.9e-27 129.0 360 31.4
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-26 125.9 362 32.6
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 8.7e-25 120.2 354 29.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.9e-24 119.0 344 32.0
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.9e-24 119.0 366 31.7
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 3.1e-22 111.7 222 36.5
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 6.9e-22 110.5 201 42.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.4e-21 108.2 357 31.4
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 5.9e-21 107.5 345 30.1
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 7.7e-21 107.1 96 51.0
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.0e-20 106.7 347 30.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.2e-20 105.5 346 29.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-20 105.5 346 29.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.2e-20 105.5 346 29.2
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.9e-20 105.1 361 29.9
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.9e-20 105.1 361 29.9
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.9e-20 105.1 316 29.4
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.0e-20 104.4 208 33.2
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.4e-19 102.8 361 30.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.4e-19 102.8 361 30.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 7.9e-18 97.1 361 29.4
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.5e-16 92.8 219 30.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 3.7e-15 88.2 73 63.0
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.2e-13 83.2 206 30.6
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 5.9e-13 80.9 312 25.3
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 5.5e-11 74.3 80 42.5
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.1e-09 67.8 186 31.2
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 8.8e-09 67.0 223 26.5
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.0e-08 65.9 209 27.3
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 7.4e-08 63.9 225 26.2
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.7e-07 62.8 82 36.6
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.8e-06 59.3 106 39.6
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 5.3e-06 57.8 197 27.9


User provided reference genes

Program Settings