Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.0e-55 219.9 122 100.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 9.2e-36 153.7 121 74.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 9.2e-36 153.7 125 70.4
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.1e-35 152.5 121 74.4
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.5e-35 151.8 124 70.2
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.6e-35 151.4 123 70.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.0e-35 151.0 123 69.9
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.3e-34 149.1 102 75.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.9e-34 148.3 120 71.7
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.9e-34 148.3 123 68.3
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 6.6e-34 147.5 124 67.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.6e-34 147.1 125 68.8
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-33 146.7 126 69.8
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.9e-33 146.0 129 68.2
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 2.5e-33 145.6 124 66.9
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.5e-33 145.6 125 68.0
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.3e-33 145.2 125 68.0
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 4.3e-33 144.8 124 66.9
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.3e-33 144.8 124 66.9
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.6e-33 144.4 124 65.3
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 7.3e-33 144.1 126 68.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 7.3e-33 144.1 121 66.9
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-32 142.9 124 66.1
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.6e-32 142.9 127 65.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.6e-32 142.9 129 64.3
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.6e-32 142.9 121 66.1
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.8e-32 142.1 124 65.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.6e-32 141.7 126 66.7
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 3.6e-32 141.7 126 67.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 4.7e-32 141.4 126 64.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.2e-32 141.0 123 65.9
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.2e-32 141.0 124 64.5
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 8.1e-32 140.6 126 63.5
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-31 140.2 125 65.6
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-31 140.2 125 65.6
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.1e-31 140.2 122 68.9
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.1e-31 140.2 127 63.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.4e-31 139.8 99 73.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 69.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.4e-31 139.8 120 65.0
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 65.0
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 65.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.8e-31 139.4 111 66.7
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.8e-31 139.4 123 65.0
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-31 139.4 123 65.0
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.4e-31 139.0 123 65.9
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 4.0e-31 138.3 123 64.2
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 5.2e-31 137.9 94 78.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-31 137.9 123 64.2
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 8.9e-31 137.1 128 63.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 63.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 123 64.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 123 64.2
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-30 136.3 123 63.4
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.5e-30 136.3 123 65.0
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 2.0e-30 136.0 123 65.0
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.6e-30 135.6 124 66.1
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 2.6e-30 135.6 117 64.1
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.4e-30 134.8 126 62.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 5.8e-30 134.4 122 61.5
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 5.8e-30 134.4 124 64.5
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.8e-30 134.4 128 62.5
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 7.6e-30 134.0 120 63.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.7e-29 132.9 127 61.4
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.2e-29 132.5 118 61.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.9e-29 132.1 124 61.3
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.9e-29 132.1 124 61.3
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 63.2
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.9e-29 131.3 118 61.9
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.9e-29 131.3 118 61.9
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.4e-29 131.0 117 64.1
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 6.4e-29 131.0 124 61.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.4e-29 130.6 127 59.8
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 64.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.4e-28 129.8 119 63.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.4e-28 129.8 125 64.0
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.4e-28 129.8 122 61.5
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.9e-28 129.4 119 61.3
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.9e-28 129.4 121 62.0
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 3.2e-28 128.6 125 60.8
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 3.2e-28 128.6 122 65.6
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.2e-28 128.3 125 59.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 5.4e-28 127.9 125 63.2
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 5.4e-28 127.9 126 61.9
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 7.1e-28 127.5 122 59.8
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 7.1e-28 127.5 122 60.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 7.1e-28 127.5 122 65.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 9.3e-28 127.1 122 59.8
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 61.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 58.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.1e-27 125.9 122 58.2
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.5e-27 125.2 100 66.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.6e-27 124.8 125 61.6
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 6.0e-27 124.4 126 60.3
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 7.8e-27 124.0 123 61.8
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 7.8e-27 124.0 121 57.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 7.8e-27 124.0 126 60.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.3e-26 123.2 126 60.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.7e-26 122.9 122 59.0
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.9e-26 121.7 125 60.0
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.1e-26 121.3 108 63.9
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.6e-26 120.9 127 56.7
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.6e-26 120.9 127 59.1
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 8.7e-26 120.6 112 61.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-25 120.2 100 67.0
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.1e-25 120.2 112 64.3
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.9e-25 119.4 124 62.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 1.9e-25 119.4 119 60.5
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.9e-25 119.4 97 66.0
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.3e-25 118.6 111 60.4
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.3e-25 118.2 127 56.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.6e-25 117.9 119 59.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.6e-25 117.9 119 58.8
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 7.3e-25 117.5 121 60.3
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 7.3e-25 117.5 124 56.5
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 9.6e-25 117.1 111 60.4
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 9.6e-25 117.1 126 54.8
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.3e-24 116.7 130 59.2
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.1e-24 115.9 124 58.1
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.1e-24 115.9 123 58.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.1e-24 115.9 124 58.1
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.8e-24 115.5 124 58.1
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.8e-24 115.5 123 55.3
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.6e-24 115.2 126 59.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.8e-24 114.8 128 52.3
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 8.1e-24 114.0 108 63.0
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.1e-24 114.0 130 56.9
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-23 113.6 122 56.6
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.1e-23 113.6 95 68.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 1.8e-23 112.8 111 59.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.4e-23 112.5 125 58.4
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.4e-23 112.5 125 58.4
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.4e-23 112.5 125 58.4
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 3.1e-23 112.1 125 58.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 3.1e-23 112.1 125 58.4
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 3.1e-23 112.1 132 58.3
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 6.9e-23 110.9 128 54.7
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 123 54.5
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 2.0e-22 109.4 121 55.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 3.4e-22 108.6 124 57.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 4.4e-22 108.2 119 55.5
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 9.9e-22 107.1 122 56.6
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.3e-21 106.7 129 54.3
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.7e-21 106.3 119 55.5
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.9e-21 105.5 128 52.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 4.9e-21 104.8 124 56.5
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.1e-20 103.6 122 54.9
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.9e-20 102.8 124 52.4
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 4.6e-19 98.2 126 53.2
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 3.6e-16 88.6 89 55.1
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 4.0e-15 85.1 73 65.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 5.3e-15 84.7 121 43.8
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 6.9e-15 84.3 117 48.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 9.0e-15 84.0 121 43.8
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.8e-14 81.3 53 83.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.6e-14 80.9 106 50.0
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 6.4e-13 77.8 121 43.8
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 2.4e-12 75.9 124 41.9
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.2e-12 75.5 56 73.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.1e-11 72.8 81 55.6
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 6.7e-10 67.8 74 54.1
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.9e-09 66.2 107 43.0
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 7.6e-06 54.3 112 41.1


User provided reference genes

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