Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 9.6e-63 244.6 295 100.0
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 5.6e-55 218.8 317 90.9
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.2e-54 214.9 328 54.9
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 3.0e-48 196.4 313 64.5
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 5.7e-47 192.2 313 63.9
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 7.4e-47 191.8 313 63.3
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 9.7e-47 191.4 317 65.3
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 6.3e-46 188.7 313 67.7
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 6.3e-46 188.7 313 38.3
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 8.2e-46 188.3 311 69.1
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 1.8e-45 187.2 313 66.8
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 1.8e-45 187.2 313 68.4
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 2.4e-45 186.8 313 60.4
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 4.1e-45 186.0 313 69.0
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 4.1e-45 186.0 311 68.8
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 5.3e-45 185.7 313 60.1
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 6.9e-45 185.3 313 63.6
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 6.9e-45 185.3 313 67.1
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 9.0e-45 184.9 313 62.6
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 1.2e-44 184.5 313 69.0
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 1.5e-44 184.1 313 69.0
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.5e-44 184.1 313 60.1
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.0e-44 183.7 312 47.4
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 2.6e-44 183.3 313 62.3
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 2.6e-44 183.3 314 59.9
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 3.4e-44 183.0 311 70.1
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 3.4e-44 183.0 310 60.3
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.0e-43 181.4 313 84.7
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 1.0e-43 181.4 314 58.6
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.3e-43 181.0 309 69.9
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 2.2e-43 180.3 313 59.7
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 2.2e-43 180.3 313 84.3
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.2e-43 180.3 313 84.7
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.8e-43 179.5 313 67.7
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 6.5e-43 178.7 309 69.6
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 8.5e-43 178.3 313 59.1
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.4e-42 177.6 312 74.4
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.4e-42 177.6 309 49.2
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 3.2e-42 176.4 270 75.9
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 4.2e-42 176.0 311 62.1
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 4.2e-42 176.0 311 67.2
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 4.2e-42 176.0 330 35.5
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 5.5e-42 175.6 313 66.5
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 5.5e-42 175.6 313 83.7
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.1e-41 173.7 319 34.8
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 4.6e-41 172.6 313 45.7
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.9e-41 171.8 326 37.4
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 1.0e-40 171.4 311 67.8
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 1.0e-40 171.4 312 68.9
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 1.0e-40 171.4 311 61.1
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.8e-40 170.6 312 68.9
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.8e-40 170.6 307 48.2
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 2.3e-40 170.2 310 66.5
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 5.1e-40 169.1 310 82.6
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 6.7e-40 168.7 311 57.9
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.8e-40 168.3 312 84.3
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 1.1e-39 167.9 313 82.7
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 1.1e-39 167.9 312 66.7
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 1.5e-39 167.5 311 57.6
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 2.5e-39 166.8 312 68.6
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 5.7e-39 165.6 270 73.7
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 7.4e-39 165.2 310 34.8
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 1.3e-38 164.5 313 56.9
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.3e-38 164.5 312 56.7
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.7e-38 164.1 312 68.3
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.7e-38 164.1 317 55.2
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 2.2e-38 163.7 309 57.9
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 2.8e-38 163.3 270 65.9
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 3.7e-38 162.9 309 57.3
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 6.3e-38 162.2 264 52.3
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 8.2e-38 161.8 313 56.5
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 1.4e-37 161.0 307 58.0
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 2.4e-37 160.2 313 59.1
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 2.4e-37 160.2 270 45.6
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 3.1e-37 159.8 313 57.5
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.9e-37 158.7 308 68.2
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.2e-36 157.9 269 75.1
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 1.2e-36 157.9 295 50.5
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 1.5e-36 157.5 309 76.1
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.0e-36 157.1 306 57.5
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.0e-35 154.8 270 48.1
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.0e-35 154.8 265 49.1
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 2.9e-35 153.3 311 57.6
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 2.9e-35 153.3 310 75.2
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 3.8e-35 152.9 266 91.4
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 3.8e-35 152.9 311 61.1
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 6.5e-35 152.1 363 31.1
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 1.4e-34 151.0 304 33.9
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.4e-34 151.0 311 61.4
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.4e-34 151.0 311 81.7
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 3.2e-34 149.8 305 32.8
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 3.2e-34 149.8 310 56.8
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 4.2e-34 149.4 268 90.3
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 5.5e-34 149.1 305 76.4
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 5.5e-34 149.1 311 58.5
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 7.2e-34 148.7 267 67.0
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.2e-33 147.9 297 47.5
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.2e-33 147.9 262 37.0
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 2.1e-33 147.1 304 63.8
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 2.7e-33 146.7 312 61.2
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 3.6e-33 146.4 310 50.0
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 3.6e-33 146.4 311 31.5
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 3.6e-33 146.4 312 56.1
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 4.7e-33 146.0 313 32.6
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 4.7e-33 146.0 307 79.2
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 4.7e-33 146.0 287 33.8
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 1.0e-32 144.8 309 33.3
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 2.3e-32 143.7 313 56.9
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.0e-32 143.3 349 32.1
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 3.7e-30 136.3 250 56.4
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.1e-29 134.8 67 89.6
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.4e-29 134.4 284 84.9
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 1.4e-29 134.4 313 54.0
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.4e-29 134.4 70 87.1
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.8e-29 134.0 284 68.7
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 2.4e-29 133.7 287 62.7
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 4.1e-29 132.9 311 53.1
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 9.1e-29 131.7 319 30.7
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 2.0e-28 130.6 266 73.7
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 2.0e-28 130.6 284 60.2
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 2.6e-28 130.2 313 60.4
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 7.7e-28 128.6 311 53.1
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 7.7e-28 128.6 66 84.8
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.3e-27 127.9 321 29.6
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.7e-27 127.5 410 27.3
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.7e-27 127.5 95 65.3
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.7e-27 127.5 312 51.9
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.2e-27 127.1 93 71.0
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 2.9e-27 126.7 283 67.8
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 3.8e-27 126.3 67 85.1
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 3.8e-27 126.3 65 84.6
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 8.5e-27 125.2 64 89.1
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 1.1e-26 124.8 66 84.8
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 1.1e-26 124.8 304 30.3
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.9e-26 124.0 67 82.1
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 3.2e-26 123.2 320 30.0
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 3.2e-26 123.2 95 63.2
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 4.2e-26 122.9 61 88.5
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.2e-25 121.3 298 31.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.6e-25 120.9 313 29.4
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 6.7e-24 115.5 66 77.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 8.8e-24 115.2 95 60.0
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 1.1e-23 114.8 93 60.2
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 2.6e-23 113.6 91 61.5
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 5.7e-23 112.5 69 78.3
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 5.7e-23 112.5 55 90.9
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 7.4e-23 112.1 91 62.6
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 7.4e-23 112.1 93 61.3
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 9.7e-23 111.7 112 54.5
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 2.8e-22 110.2 56 87.5
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.7e-22 109.8 91 60.4
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.1e-21 108.2 90 58.9
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.1e-21 108.2 90 58.9
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.8e-21 107.5 95 60.0
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 4.1e-21 106.3 67 70.1
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.6e-20 104.4 310 56.8
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 2.6e-20 103.6 90 55.6
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 5.9e-20 102.4 96 55.2
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 5.9e-20 102.4 96 55.2
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 1.5e-18 97.8 95 57.9
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 4.7e-17 92.8 50 80.0
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 4.0e-16 89.7 50 78.0
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.6e-15 87.0 90 48.9
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 5.7e-15 85.9 73 60.3
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 2.8e-14 83.6 94 45.7
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 2.0e-12 77.4 51 58.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 2.0e-12 77.4 59 62.7
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 2.9e-11 73.6 48 62.5
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 8.5e-11 72.0 44 72.7
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.5e-10 71.2 78 48.7
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 5.5e-10 69.3 63 54.0
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 7.2e-10 68.9 47 57.4
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.7e-09 67.0 32 93.8
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 6.1e-09 65.9 45 60.0
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 6.1e-09 65.9 69 49.3
BcaB01g05424 Brassica carinata HOM05D000005 ORTHO05D000449 6.8e-08 62.4 28 96.4
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 6.8e-08 62.4 53 52.8
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.2e-07 61.6 69 46.4
Medtr8g085230 Medicago truncatula HOM05D003773 ORTHO05D004377 2.0e-07 60.8 35 80.0
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 2.6e-07 60.5 29 79.3


User provided reference genes

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