Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 7.5e-46 186.8 93 100.0
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 7.6e-22 107.1 96 61.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.0e-10 70.1 47 59.6
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.1e-10 67.8 52 53.8
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 8.7e-10 67.0 68 45.6
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.1e-09 66.6 90 41.1
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.9e-09 65.9 51 54.9
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.3e-09 65.1 41 65.9
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 3.3e-09 65.1 91 36.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 4.3e-09 64.7 41 63.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.3e-09 64.7 92 39.1
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 4.3e-09 64.7 44 59.1
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 4.3e-09 64.7 73 42.5
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 5.6e-09 64.3 41 65.9
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 5.6e-09 64.3 41 65.9
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 5.6e-09 64.3 41 65.9
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 5.6e-09 64.3 41 65.9
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.3e-09 63.9 59 44.1
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 7.3e-09 63.9 41 63.4
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 9.6e-09 63.5 92 39.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 9.6e-09 63.5 58 46.6
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.3e-08 63.2 47 51.1
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.6e-08 62.8 92 38.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.6e-08 62.8 81 38.3
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 2.1e-08 62.4 40 65.0
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 2.1e-08 62.4 41 61.0
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 2.1e-08 62.4 40 60.0
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.1e-08 62.4 82 41.5
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.1e-08 62.4 54 46.3
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.1e-08 62.4 41 58.5
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 2.8e-08 62.0 41 61.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.8e-08 62.0 41 61.0
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 2.8e-08 62.0 47 51.1
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.8e-08 62.0 86 40.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 3.6e-08 61.6 55 49.1
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 3.6e-08 61.6 66 42.4
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 3.6e-08 61.6 90 36.7
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 4.8e-08 61.2 41 56.1
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-08 61.2 41 56.1
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-08 61.2 41 56.1
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.8e-08 61.2 41 56.1
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 4.8e-08 61.2 41 56.1
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 4.8e-08 61.2 47 53.2
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 4.8e-08 61.2 95 35.8
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 4.8e-08 61.2 83 38.6
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 6.2e-08 60.8 41 61.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 6.2e-08 60.8 41 61.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.2e-08 60.8 41 61.0
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 6.2e-08 60.8 48 50.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 6.2e-08 60.8 64 43.8
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 8.1e-08 60.5 95 34.7
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 8.1e-08 60.5 76 39.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 8.1e-08 60.5 54 44.4
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-07 60.1 81 37.0
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 1.1e-07 60.1 41 61.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.4e-07 59.7 41 53.7
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.4e-07 59.7 90 38.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.4e-07 59.7 91 38.5
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-07 59.7 43 53.5
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 1.8e-07 59.3 70 41.4
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.8e-07 59.3 84 40.5
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.8e-07 59.3 41 61.0
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.8e-07 59.3 47 48.9
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.8e-07 59.3 47 51.1
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.4e-07 58.9 51 45.1
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.4e-07 58.9 40 55.0
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.1e-07 58.5 40 57.5
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 3.1e-07 58.5 85 38.8
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 4.0e-07 58.2 60 46.7
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.0e-07 58.2 64 40.6
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 5.3e-07 57.8 77 37.7
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 6.9e-07 57.4 50 46.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 9.0e-07 57.0 41 53.7
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 9.0e-07 57.0 90 33.3
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 9.0e-07 57.0 90 33.3
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 9.0e-07 57.0 88 35.2
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.2e-06 56.6 51 47.1
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.2e-06 56.6 84 32.1
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.2e-06 56.6 41 56.1
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.2e-06 56.6 63 39.7
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.5e-06 56.2 41 53.7
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.5e-06 56.2 91 34.1
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.5e-06 56.2 93 36.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.0e-06 55.8 87 35.6
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 2.6e-06 55.5 41 53.7
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.6e-06 55.5 50 50.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.6e-06 55.5 88 38.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 2.6e-06 55.5 82 37.8
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 3.4e-06 55.1 50 48.0
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 3.4e-06 55.1 59 45.8
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.4e-06 54.7 89 34.8
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.8e-06 54.3 49 44.9
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 5.8e-06 54.3 48 37.5
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 7.6e-06 53.9 46 43.5
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 7.6e-06 53.9 50 40.0
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 7.6e-06 53.9 77 35.1
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 9.9e-06 53.5 58 43.1


User provided reference genes

Program Settings