Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 0.0e+00 1292.7 613 100.0
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.4e-193 679.5 611 56.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 5.7e-134 482.3 521 47.8
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-75 288.5 372 41.9
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.0e-75 286.2 407 40.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.1e-74 283.1 406 40.9
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.6e-73 279.6 162 80.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.4e-57 226.1 134 73.9
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 7.4e-57 226.1 156 66.7
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.6e-56 223.8 141 70.9
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 4.8e-56 223.4 135 72.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 8.1e-56 222.6 137 70.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.4e-55 221.1 134 70.9
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 9.0e-55 219.2 143 69.2
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.0e-55 219.2 145 68.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.0e-55 219.2 149 65.8
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.5e-54 218.4 141 68.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.5e-54 218.4 120 75.0
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.0e-54 218.0 130 72.3
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 5.8e-54 216.5 156 67.9
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 9.9e-54 215.7 116 79.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.3e-53 215.3 135 67.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 2.2e-53 214.5 116 79.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 4.9e-53 213.4 148 66.9
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 8.4e-53 212.6 140 68.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.9e-52 211.5 147 64.6
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.2e-52 210.7 130 70.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.2e-52 210.7 141 67.4
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 7.1e-52 209.5 114 76.3
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.2e-51 208.8 153 64.7
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.6e-51 208.4 120 72.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.6e-51 208.4 147 65.3
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.1e-51 208.0 149 64.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.1e-51 208.0 136 66.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.1e-51 208.0 142 66.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.1e-51 208.0 138 63.8
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.1e-51 208.0 135 69.6
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.1e-51 208.0 129 71.3
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.7e-51 207.6 135 68.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.7e-51 207.6 146 64.4
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 4.6e-51 206.8 130 68.5
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 4.6e-51 206.8 142 66.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 4.6e-51 206.8 154 61.7
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 6.0e-51 206.5 146 64.4
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.3e-50 205.3 122 71.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.3e-50 205.3 121 72.7
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.8e-50 204.9 146 65.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.3e-50 204.5 145 64.8
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.3e-50 204.5 145 61.4
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.3e-50 204.5 143 63.6
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 3.0e-50 204.1 140 62.9
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.0e-50 204.1 136 64.0
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.9e-50 203.8 146 63.7
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 5.1e-50 203.4 146 63.7
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 5.1e-50 203.4 148 65.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.1e-50 203.4 140 62.1
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 5.1e-50 203.4 134 66.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 8.7e-50 202.6 133 65.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 8.7e-50 202.6 135 64.4
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.1e-49 202.2 146 65.8
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.5e-49 201.8 141 66.0
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.9e-49 201.4 141 61.7
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.9e-49 201.4 149 62.4
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.5e-49 201.1 134 67.2
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.5e-49 201.1 134 67.2
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.5e-49 201.1 147 61.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 2.5e-49 201.1 134 64.2
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 3.3e-49 200.7 125 68.0
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.3e-49 200.7 137 65.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.6e-49 199.9 144 62.5
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 7.4e-49 199.5 146 65.1
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 7.4e-49 199.5 146 63.7
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 7.4e-49 199.5 133 64.7
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 9.6e-49 199.1 146 63.7
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.8e-48 197.6 144 61.8
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 2.8e-48 197.6 132 68.9
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 3.7e-48 197.2 123 70.7
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.7e-48 197.2 159 57.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 3.7e-48 197.2 144 61.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 6.2e-48 196.4 146 63.7
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.2e-48 196.4 150 58.0
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-47 195.7 136 64.0
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 4.0e-47 193.7 120 68.3
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 5.3e-47 193.4 131 67.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 6.9e-47 193.0 118 71.2
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.0e-46 191.4 109 74.3
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 5.8e-46 189.9 134 64.9
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.7e-45 188.3 125 66.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.7e-45 188.3 114 70.2
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.8e-45 187.2 121 64.5
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 6.5e-45 186.4 121 63.6
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 6.5e-45 186.4 121 63.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 8.4e-45 186.0 149 57.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.4e-44 185.3 133 60.2
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.2e-43 182.2 134 56.7
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.2e-43 182.2 146 58.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.6e-43 181.8 176 48.9
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 6.0e-43 179.9 141 53.9
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.0e-42 179.1 145 51.7
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.4e-39 168.7 141 58.9
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 5.7e-33 146.7 162 45.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.3e-32 145.6 143 52.4
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.8e-31 141.7 115 52.2
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 5.3e-31 140.2 81 71.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 5.3e-31 140.2 86 69.8
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.7e-29 135.2 75 73.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.9e-29 134.4 113 50.4
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.2e-28 130.6 74 75.7
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.7e-27 127.9 146 40.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.0e-26 125.9 90 58.9
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.8e-26 125.2 90 57.8
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.5e-22 112.1 89 51.7
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.0e-22 111.7 74 62.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.6e-22 111.3 93 47.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.0e-21 109.4 118 47.5
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 8.5e-21 106.3 149 43.0
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 5.5e-20 103.6 92 50.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 6.7e-18 96.7 60 66.7
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.1e-17 95.9 93 47.3
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.6e-17 94.7 99 40.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 7.0e-15 86.7 70 55.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 7.2e-12 76.6 56 53.6
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.7e-11 73.9 112 36.6
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.0e-10 71.2 83 49.4
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 2.2e-08 65.1 39 69.2
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 8.2e-08 63.2 86 41.9
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.4e-07 62.4 37 67.6
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.4e-07 62.4 40 60.0
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.4e-07 61.6 61 52.5
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.5e-06 57.4 40 55.0


User provided reference genes

Program Settings