Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01246 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.1e-59 233.0 111 100.0
Eucgr.G01240 Eucalyptus grandis HOM05D000395 ORTHO05D000088 9.3e-27 123.6 111 58.6
Eucgr.G00888 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.1e-26 122.5 111 56.8
Eucgr.G01238 Eucalyptus grandis HOM05D000395 ORTHO05D000088 7.4e-24 114.0 103 57.3
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.2e-19 98.6 108 45.4
Eucgr.G01245 Eucalyptus grandis HOM05D000395 ORTHO05D000088 7.1e-19 97.4 117 47.0
Eucgr.D00268 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.1e-18 95.9 107 45.8
Eucgr.D00269 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.0e-17 93.6 105 44.8
Eucgr.G00889 Eucalyptus grandis HOM05D000395 ORTHO05D000088 5.1e-17 91.3 104 50.0
Eucgr.G01241 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.3e-15 86.7 119 40.3
Eucgr.G01639 Eucalyptus grandis HOM05D000395 ORTHO05D000088 6.9e-14 80.9 94 43.6
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 5.0e-12 74.7 94 40.4
Eucgr.I00397 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.4e-11 73.2 89 39.3
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 4.2e-11 71.6 106 34.9
Dinv26763 Davidia involucrata HOM05D000395 ORTHO05D000088 5.5e-11 71.2 101 40.6
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.5e-11 71.2 106 38.7
Gohir.D12G067900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.5e-11 71.2 106 41.5
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 1.2e-10 70.1 87 40.2
Prupe.7G143500 Prunus persica HOM05D000395 ORTHO05D000088 1.2e-10 70.1 101 36.6
Eucgr.B02808 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.6e-10 69.7 96 36.5
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.1e-10 69.3 106 37.7
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.1e-10 69.3 106 40.6
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.7e-10 68.9 106 37.7
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 2.7e-10 68.9 101 36.6
Lj7A19G27 Lonicera japonica HOM05D000395 ORTHO05D000088 3.6e-10 68.6 101 36.6
QL06p043952 Quercus lobata HOM05D000395 ORTHO05D000088 3.6e-10 68.6 101 36.6
vmacro16013 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 4.6e-10 68.2 89 37.1
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 6.1e-10 67.8 89 40.4
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 7.9e-10 67.4 103 32.0
Lj7C16G12 Lonicera japonica HOM05D000395 ORTHO05D000088 1.4e-09 66.6 87 39.1
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.8e-09 66.2 102 34.3
Lj3g0028048 Lotus japonicus HOM05D000395 ORTHO05D000088 1.8e-09 66.2 96 31.2
Lj7C19G3 Lonicera japonica HOM05D000395 ORTHO05D000088 2.3e-09 65.9 87 39.1
Gohir.A12G067500 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.9e-09 65.1 106 38.7
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 3.9e-09 65.1 91 31.9
Phvul.007G019500 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 5.1e-09 64.7 91 34.1
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 5.1e-09 64.7 101 38.6
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 6.7e-09 64.3 114 30.7
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 8.8e-09 63.9 89 32.6
arahy.Tifrunner.gnm1.ann1.WQR5HD Arachis hypogaea HOM05D000395 ORTHO05D000088 8.8e-09 63.9 108 35.2
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 8.8e-09 63.9 105 36.2
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 1.1e-08 63.5 113 30.1
Eucgr.I00399 Eucalyptus grandis HOM05D041455 ORTHO05D000088 1.5e-08 63.2 91 35.2
MD02G1159700 Malus domestica HOM05D000395 ORTHO05D000088 1.5e-08 63.2 103 31.1
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 1.9e-08 62.8 115 32.2
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 1.9e-08 62.8 89 32.6
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 2.5e-08 62.4 89 31.5
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.5e-08 62.4 93 34.4
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.5e-08 62.4 115 32.2
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 2.5e-08 62.4 87 34.5
Manes.07G115200 Manihot esculenta HOM05D000395 ORTHO05D000088 2.5e-08 62.4 100 32.0
Prupe.7G143700 Prunus persica HOM05D000395 ORTHO05D000088 2.5e-08 62.4 90 37.8
CSS0034604 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 3.3e-08 62.0 89 37.1
Lj2A600G55 Lonicera japonica HOM05D000395 ORTHO05D000088 3.3e-08 62.0 96 35.4
arahy.Tifrunner.gnm1.ann1.WFEC9T Arachis hypogaea HOM05D000395 ORTHO05D000088 4.3e-08 61.6 101 28.7
arahy.Tifrunner.gnm1.ann1.TU4N0L Arachis hypogaea HOM05D000395 ORTHO05D000088 5.7e-08 61.2 90 32.2
Lj6C562T8 Lonicera japonica HOM05D000823 ORTHO05D000088 5.7e-08 61.2 103 31.1
Lalb_Chr10g0095151 Lupinus albus HOM05D000395 ORTHO05D000088 7.4e-08 60.8 87 29.9
Phvul.007G019700 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 7.4e-08 60.8 99 35.4
Thecc.01G047100 Theobroma cacao HOM05D000395 ORTHO05D000088 7.4e-08 60.8 103 33.0
Lalb_Chr10g0095161 Lupinus albus HOM05D000395 ORTHO05D000088 9.7e-08 60.5 99 31.3
Sabra01G0175400 Salix brachista HOM05D000395 ORTHO05D000088 9.7e-08 60.5 99 34.3
GSVIVG01005087001 Vitis vinifera HOM05D000395 ORTHO05D000088 9.7e-08 60.5 101 34.7
arahy.Tifrunner.gnm1.ann1.41XJ7P Arachis hypogaea HOM05D000395 ORTHO05D000088 1.3e-07 60.1 108 34.3
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 1.3e-07 60.1 105 34.3
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 1.3e-07 60.1 93 35.5
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.3e-07 60.1 115 30.4
Manes.13G130900 Manihot esculenta HOM05D000395 ORTHO05D000088 1.3e-07 60.1 78 37.2
QL04p007054 Quercus lobata HOM05D000395 ORTHO05D000088 1.3e-07 60.1 97 36.1
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 1.3e-07 60.1 100 32.0
VMungo0720G2046 Vigna mungo HOM05D000395 ORTHO05D000088 1.3e-07 60.1 87 35.6
arahy.Tifrunner.gnm1.ann1.66D6IA Arachis hypogaea HOM05D000395 ORTHO05D000088 1.7e-07 59.7 88 31.8
arahy.Tifrunner.gnm1.ann1.ICSV9P Arachis hypogaea HOM05D000395 ORTHO05D000088 1.7e-07 59.7 99 33.3
arahy.Tifrunner.gnm1.ann1.T57XL4 Arachis hypogaea HOM05D000395 ORTHO05D000088 1.7e-07 59.7 104 27.9
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 1.7e-07 59.7 100 33.0
Phvul.003G033400 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 1.7e-07 59.7 107 31.8
VMungo0720G0704 Vigna mungo HOM05D000395 ORTHO05D000088 1.7e-07 59.7 95 32.6
Gohir.D11G195300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.2e-07 59.3 96 33.3
Lj2A564T41 Lonicera japonica HOM05D000395 ORTHO05D000088 2.2e-07 59.3 100 32.0
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 2.2e-07 59.3 98 33.7
TPR.G14798 Trifolium pratense HOM05D000395 ORTHO05D000088 2.2e-07 59.3 89 34.8
Gorai.007G209200 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.8e-07 58.9 96 33.3
Lalb_Chr19g0126241 Lupinus albus HOM05D000395 ORTHO05D000088 2.8e-07 58.9 98 39.8
Eucgr.I00400 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.7e-07 58.5 104 33.7
Eucgr.I00465 Eucalyptus grandis HOM05D041455 ORTHO05D000088 3.7e-07 58.5 94 34.0
VMungo1215G0226 Vigna mungo HOM05D000395 ORTHO05D000088 3.7e-07 58.5 86 32.6
Ca_20814_v3 Cicer arietinum L. HOM05D000395 ORTHO05D000088 4.8e-07 58.2 109 35.8
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.8e-07 58.2 94 30.9
Lj4C136T19 Lonicera japonica HOM05D000395 ORTHO05D000088 4.8e-07 58.2 87 37.9
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 4.8e-07 58.2 89 33.7
Lj2g0021298 Lotus japonicus HOM05D000395 ORTHO05D000088 6.3e-07 57.8 97 35.1
Psat5g163560 Pisum sativum HOM05D000395 ORTHO05D000088 6.3e-07 57.8 50 46.0
QL05p004460 Quercus lobata HOM05D000395 ORTHO05D000088 6.3e-07 57.8 111 34.2
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.1e-06 57.0 99 30.3
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.1e-06 57.0 99 31.3
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 1.1e-06 57.0 99 32.3
QL03p028606 Quercus lobata HOM05D000395 ORTHO05D000088 1.1e-06 57.0 111 33.3
Eucgr.H02901 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.4e-06 56.6 103 29.1
FvH4_6g38690 Fragaria vesca HOM05D000395 ORTHO05D000088 1.4e-06 56.6 89 31.5
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 1.4e-06 56.6 100 31.0
PGR102G2424 Punica granatum HOM05D000395 ORTHO05D000088 1.4e-06 56.6 101 30.7
QL04p022650 Quercus lobata HOM05D000395 ORTHO05D000088 1.4e-06 56.6 111 33.3
Dinv27599 Davidia involucrata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 88 33.0
FvH4_1g14660 Fragaria vesca HOM05D000395 ORTHO05D000088 1.8e-06 56.2 90 36.7
Prupe.7G143800 Prunus persica HOM05D000395 ORTHO05D000088 1.8e-06 56.2 90 35.6
QL05p019978 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL05p056144 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL07p009373 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL08p006800 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL08p013507 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL09p000034 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL10p055235 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL10p058022 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
QL11p014114 Quercus lobata HOM05D000395 ORTHO05D000088 1.8e-06 56.2 111 33.3
vmacro02164 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 1.8e-06 56.2 90 33.3
arahy.Tifrunner.gnm1.ann1.6WA88G Arachis hypogaea HOM05D000395 ORTHO05D000088 2.4e-06 55.8 103 35.9
arahy.Tifrunner.gnm1.ann1.ARIM3Z Arachis hypogaea HOM05D000395 ORTHO05D000088 2.4e-06 55.8 103 35.9
arahy.Tifrunner.gnm1.ann1.B2IBRN Arachis hypogaea HOM05D000395 ORTHO05D000088 2.4e-06 55.8 99 31.3
Glyma.20G108000 Glycine max HOM05D000395 ORTHO05D000088 2.4e-06 55.8 94 33.0
Gohir.1Z049472 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.4e-06 55.8 88 28.4
Lalb_Chr10g0095141 Lupinus albus HOM05D000395 ORTHO05D000088 2.4e-06 55.8 92 28.3
Lalb_Chr17g0345311 Lupinus albus HOM05D000395 ORTHO05D000088 2.4e-06 55.8 97 30.9
MD15G1273900 Malus domestica HOM05D000395 ORTHO05D000088 2.4e-06 55.8 87 34.5
Medtr3g061320 Medicago truncatula HOM05D000395 ORTHO05D000088 2.4e-06 55.8 99 32.3
Potri.004G147200 Populus trichocarpa HOM05D000395 ORTHO05D000088 2.4e-06 55.8 101 33.7
Potri.004G230100 Populus trichocarpa HOM05D000395 ORTHO05D000088 2.4e-06 55.8 89 33.7
RcHm_v2.0_Chr7g0227351 Rosa chinensis HOM05D000395 ORTHO05D000088 2.4e-06 55.8 100 36.0
THA.LOC104803466 Tarenaya hassleriana HOM05D000395 ORTHO05D000088 2.4e-06 55.8 106 31.1
TPR.G35646 Trifolium pratense HOM05D000395 ORTHO05D000088 2.4e-06 55.8 101 32.7
CANSAT01G1431 Cannabis sativa HOM05D000395 ORTHO05D000088 3.1e-06 55.5 94 29.8
Gohir.A11G188800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.1e-06 55.5 96 31.2
Lj2g0024892 Lotus japonicus HOM05D000395 ORTHO05D000088 3.1e-06 55.5 88 33.0
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 3.1e-06 55.5 90 33.3
Medtr1g021435 Medicago truncatula HOM05D000823 ORTHO05D000088 3.1e-06 55.5 98 34.7
Medtr3g061300 Medicago truncatula HOM05D000395 ORTHO05D000088 3.1e-06 55.5 96 29.2
RcHm_v2.0_Chr2g0103441 Rosa chinensis HOM05D000395 ORTHO05D000088 3.1e-06 55.5 88 36.4
arahy.Tifrunner.gnm1.ann1.F6NJQK Arachis hypogaea HOM05D000395 ORTHO05D000088 4.1e-06 55.1 84 31.0
FvH4_1g14700 Fragaria vesca HOM05D000395 ORTHO05D000088 4.1e-06 55.1 99 35.4
Prupe.7G144000 Prunus persica HOM05D000395 ORTHO05D000088 4.1e-06 55.1 93 33.3
QL03p000468 Quercus lobata HOM05D000395 ORTHO05D000088 4.1e-06 55.1 111 32.4
Aqoxy5G01406 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 5.3e-06 54.7 86 32.6
arahy.Tifrunner.gnm1.ann1.68615N Arachis hypogaea HOM05D000395 ORTHO05D000088 5.3e-06 54.7 99 30.3
arahy.Tifrunner.gnm1.ann1.KVXN1E Arachis hypogaea HOM05D000212 ORTHO05D005509 5.3e-06 54.7 100 29.0
FAN14G0529 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.3e-06 54.7 109 31.2
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.3e-06 54.7 102 34.3
Glyma.20G108400 Glycine max HOM05D000395 ORTHO05D000088 5.3e-06 54.7 97 33.0
Gorai.004G260200 Gossypium raimondii HOM05D000395 ORTHO05D000088 5.3e-06 54.7 88 28.4
Phvul.007G019400 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 5.3e-06 54.7 87 34.5
Psat6g097800 Pisum sativum HOM05D000395 ORTHO05D000088 5.3e-06 54.7 89 31.5
TAR628G1113 Trochodendron aralioides HOM05D000395 ORTHO05D000088 5.3e-06 54.7 97 37.1
Atru.chr5.2850 Acer truncatum HOM05D000395 ORTHO05D000088 6.9e-06 54.3 92 31.5
arahy.Tifrunner.gnm1.ann1.PX0CMU Arachis hypogaea HOM05D000395 ORTHO05D000088 6.9e-06 54.3 84 29.8
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 6.9e-06 54.3 97 35.1
Gohir.A08G223600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.9e-06 54.3 88 28.4
Lj2g0004829 Lotus japonicus HOM05D000395 ORTHO05D000088 6.9e-06 54.3 83 36.1
Manes.10G033500 Manihot esculenta HOM05D000395 ORTHO05D000088 6.9e-06 54.3 80 33.8
Prupe.7G143900 Prunus persica HOM05D000395 ORTHO05D000088 6.9e-06 54.3 98 32.7
QL01p024175 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL01p054148 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL02p058028 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL02p097973 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL03p067026 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL05p061698 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL07p047587 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL08p005702 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL08p006039 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
QL08p030552 Quercus lobata HOM05D000395 ORTHO05D000088 6.9e-06 54.3 111 32.4
Thecc.02G092500 Theobroma cacao HOM05D000395 ORTHO05D000088 6.9e-06 54.3 103 29.1
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.9e-06 54.3 105 29.5
Eucgr.I00402 Eucalyptus grandis HOM05D041455 ORTHO05D000088 9.1e-06 53.9 85 31.8
Eucgr.I00407 Eucalyptus grandis HOM05D000395 ORTHO05D000088 9.1e-06 53.9 88 34.1
Lj1g0016560 Lotus japonicus HOM05D000395 ORTHO05D000088 9.1e-06 53.9 108 29.6
PSO675G8075 Papaver somniferum HOM05D000395 ORTHO05D000088 9.1e-06 53.9 102 31.4
QL06p036952 Quercus lobata HOM05D000395 ORTHO05D000088 9.1e-06 53.9 111 33.3
RhsimUnG0104300 Rhododendron simsii HOM05D000395 ORTHO05D000088 9.1e-06 53.9 89 31.5
RcHm_v2.0_Chr2g0118951 Rosa chinensis HOM05D000395 ORTHO05D000088 9.1e-06 53.9 91 31.9
Hund26609 Selenicereus undatus HOM05D000823 ORTHO05D000088 9.1e-06 53.9 96 31.2
Solyc02g065310.1 Solanum lycopersicum HOM05D000395 ORTHO05D000088 9.1e-06 53.9 108 30.6
Thecc.04G036400 Theobroma cacao HOM05D000395 ORTHO05D000088 9.1e-06 53.9 76 36.8
TPR.G2870 Trifolium pratense HOM05D000395 ORTHO05D000088 9.1e-06 53.9 101 32.7


User provided reference genes

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