Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.7e-312 1074.7 539 100.0
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.5e-297 1024.2 539 96.7
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.8e-256 886.7 550 80.9
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 4.4e-255 884.4 550 81.6
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.8e-254 880.9 550 79.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 6.3e-254 880.6 551 80.8
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.8e-253 879.0 550 79.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.7e-252 875.2 562 78.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.7e-252 875.2 566 77.4
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.7e-252 875.2 568 78.7
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.2e-251 872.1 550 79.8
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 5.0e-251 870.9 550 78.2
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 5.0e-251 870.9 549 79.8
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.5e-250 869.4 554 79.1
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.2e-250 868.2 549 79.1
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.2e-250 867.8 594 75.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.6e-249 865.9 550 79.5
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.7e-249 865.1 549 78.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 2.3e-248 862.1 578 76.3
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 5.2e-248 860.9 556 77.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 9.8e-247 856.7 575 76.2
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.7e-246 855.9 559 78.5
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.7e-246 854.7 549 77.0
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.8e-245 852.4 555 76.4
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 9.1e-245 850.1 565 76.8
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 2.0e-244 849.0 550 77.1
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 4.5e-244 847.8 546 76.9
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 7.7e-244 847.0 573 74.2
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.0e-243 846.7 556 77.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.3e-243 845.5 536 78.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.1e-242 843.2 549 76.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 5.5e-242 840.9 555 76.9
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.8e-241 838.6 546 77.1
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 8.0e-241 837.0 549 76.1
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.8e-240 835.9 550 75.6
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.8e-240 835.9 577 73.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.0e-240 834.7 549 75.4
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 4.0e-240 834.7 597 71.0
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 8.9e-240 833.6 549 76.5
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 8.9e-240 833.6 533 77.7
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.5e-239 832.8 549 76.3
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 6.3e-238 827.4 532 78.0
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 8.3e-238 827.0 549 75.6
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.1e-237 826.6 550 74.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 2.4e-237 825.5 549 75.4
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 9.2e-237 823.5 535 77.8
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 9.2e-237 823.5 596 72.0
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.5e-236 821.6 559 74.8
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 7.8e-236 820.5 551 75.1
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 7.8e-236 820.5 549 75.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.0e-235 820.1 554 74.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.7e-235 819.3 555 74.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 2.9e-235 818.5 549 75.4
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 3.3e-234 815.1 551 74.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 3.3e-234 815.1 576 74.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 4.3e-234 814.7 536 75.9
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 4.3e-234 814.7 533 77.9
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.8e-232 809.3 546 75.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 4.0e-232 808.1 517 78.9
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 5.2e-232 807.7 536 74.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 6.8e-232 807.4 517 76.8
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-230 802.7 587 69.8
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 8.3e-230 800.4 520 77.9
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.1e-229 800.0 483 80.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 4.3e-226 788.1 535 73.1
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 9.5e-226 786.9 665 63.5
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 6.2e-225 784.3 489 78.3
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.4e-224 783.1 483 80.7
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.3e-224 782.3 553 72.3
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.2e-223 780.0 528 73.9
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.2e-223 780.0 553 72.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.3e-222 776.5 522 74.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 6.4e-222 774.2 528 73.7
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.4e-221 773.1 492 77.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 4.1e-221 771.5 462 82.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 7.0e-221 770.8 498 76.3
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.5e-220 768.5 505 76.0
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.3e-218 760.8 609 66.3
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.6e-217 759.6 524 74.6
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 6.8e-216 754.2 538 70.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 3.4e-215 751.9 537 72.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.2e-212 743.4 562 69.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 1.6e-209 733.0 550 69.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.6e-209 731.9 596 64.6
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.2e-207 726.9 443 80.6
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.4e-206 721.1 587 64.4
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 8.7e-203 710.7 483 72.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.5e-202 709.9 488 71.7
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 9.0e-200 700.7 490 72.0
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 5.8e-199 698.0 546 66.5
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.9e-198 694.9 475 73.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.4e-197 692.6 505 67.5
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 4.2e-197 691.8 484 69.2
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.3e-195 686.0 440 76.6
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.8e-187 659.8 507 68.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 3.0e-187 659.1 552 63.9
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 4.0e-184 648.7 485 63.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.2e-183 647.1 434 73.3
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.5e-181 638.3 486 64.4
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.1e-178 630.6 505 61.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 7.6e-175 617.8 423 71.9
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 3.2e-173 612.5 539 62.0
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.6e-172 610.1 469 66.3
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.1e-170 604.0 446 71.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 4.2e-165 585.5 333 88.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.4e-155 553.9 322 85.7
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 3.0e-155 552.7 364 79.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 6.7e-155 551.6 491 56.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 2.0e-151 540.0 490 56.7
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-143 514.2 322 79.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 4.8e-137 492.3 293 86.0
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.8e-126 456.1 481 45.7
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 2.2e-121 440.3 261 84.7
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 7.5e-114 415.2 259 78.8
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.0e-108 395.2 443 51.5
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.0e-102 376.7 402 55.0
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 3.7e-97 359.8 221 81.0
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 5.6e-93 345.9 205 84.4
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 2.7e-87 327.0 206 75.7
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 7.6e-82 308.9 183 83.6
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 8.4e-81 305.4 206 73.3
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.9e-80 304.3 205 72.2
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 3.3e-77 293.5 205 67.8
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 4.6e-71 273.1 479 35.7
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.1e-63 247.7 140 80.0
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 6.5e-49 199.5 249 49.0
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.2e-48 197.2 139 74.1
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 4.6e-47 193.4 445 32.8
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 8.8e-46 189.1 181 54.1
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.6e-42 177.6 350 35.4
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.2e-40 169.5 136 63.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 5.7e-37 159.8 89 83.1
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 5.7e-37 159.8 89 83.1
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 5.9e-34 149.8 114 72.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 9.4e-32 142.5 123 60.2
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.0e-30 139.0 99 69.7
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 7.7e-26 122.9 148 52.0
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.7e-25 121.7 66 93.9
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.6e-23 115.2 64 82.8
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 8.8e-22 109.4 68 82.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.5e-21 108.6 138 48.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.6e-21 107.8 64 79.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 6.3e-20 103.2 86 61.6
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.1e-19 100.5 54 81.5
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 9.1e-19 99.4 57 87.7
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.0e-18 98.2 52 88.5
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 5.0e-17 93.6 103 56.3
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 5.2e-14 83.6 119 40.3
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 8.8e-14 82.8 58 74.1
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 8.3e-12 76.3 61 60.7
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-10 72.4 88 46.6
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 4.5e-10 70.5 46 73.9
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 6.6e-09 66.6 72 50.0
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.6e-08 63.5 51 60.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 1.4e-06 58.9 43 65.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.3e-06 58.2 51 56.9
BcaB06g27551 Brassica carinata HOM05D004684 ORTHO05D094740 6.8e-06 56.6 38 60.5


User provided reference genes

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