Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01056 Eucalyptus grandis HOM05D003560 ORTHO05D009919 4.8e-45 184.1 92 100.0
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 4.2e-17 91.3 63 74.6
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 1.1e-09 66.6 61 59.0
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 1.5e-09 66.2 61 59.0
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 3.3e-09 65.1 61 59.0
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 7.3e-09 63.9 63 54.0
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 9.5e-09 63.5 61 59.0
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 9.5e-09 63.5 61 59.0
Eucgr.D01199 Eucalyptus grandis HOM05D007841 ORTHO05D009919 1.2e-08 63.2 30 100.0
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 1.6e-08 62.8 61 59.0
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 1.6e-08 62.8 44 70.5
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 2.1e-08 62.4 61 55.7
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 2.1e-08 62.4 44 68.2
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 2.1e-08 62.4 72 51.4
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 2.1e-08 62.4 61 55.7
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 2.8e-08 62.0 61 55.7
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 2.8e-08 62.0 61 55.7
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 3.6e-08 61.6 61 55.7
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 4.7e-08 61.2 64 57.8
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 4.7e-08 61.2 61 57.4
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 4.7e-08 61.2 61 55.7
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 4.7e-08 61.2 66 53.0
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 4.7e-08 61.2 61 57.4
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 6.1e-08 60.8 61 55.7
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 6.1e-08 60.8 61 55.7
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 8.0e-08 60.5 61 57.4
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 8.0e-08 60.5 61 55.7
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 8.0e-08 60.5 61 54.1
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.0e-07 60.1 61 55.7
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 1.0e-07 60.1 61 57.4
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 1.0e-07 60.1 60 56.7
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.0e-07 60.1 60 55.0
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 1.0e-07 60.1 61 52.5
Actinidia24369 Actinidia chinensis HOM05D003560 ORTHO05D004500 1.4e-07 59.7 65 53.8
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 1.4e-07 59.7 66 50.0
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 1.4e-07 59.7 66 50.0
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 1.4e-07 59.7 61 54.1
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.4e-07 59.7 61 54.1
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.4e-07 59.7 61 54.1
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 1.4e-07 59.7 61 55.7
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 1.4e-07 59.7 61 54.1
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 1.4e-07 59.7 63 55.6
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 1.4e-07 59.7 44 63.6
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 1.4e-07 59.7 44 63.6
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 1.8e-07 59.3 62 51.6
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 1.8e-07 59.3 66 50.0
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 1.8e-07 59.3 66 50.0
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 54.1
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 54.1
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 55.7
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 55.7
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 55.7
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.8e-07 59.3 61 54.1
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 1.8e-07 59.3 38 65.8
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 1.8e-07 59.3 38 65.8
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.3e-07 58.9 61 54.1
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.3e-07 58.9 61 54.1
Gohir.D12G101400 Gossypium hirsutum HOM05D007841 ORTHO05D009919 2.3e-07 58.9 30 90.0
Gorai.008G110500 Gossypium raimondii HOM05D007841 ORTHO05D009919 2.3e-07 58.9 30 90.0
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 2.3e-07 58.9 61 52.5
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 2.3e-07 58.9 66 53.0
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 2.3e-07 58.9 61 55.7
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 3.0e-07 58.5 61 52.5
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 3.0e-07 58.5 61 54.1
Duzib138G1421 Durio zibethinus HOM05D007841 ORTHO05D009919 3.0e-07 58.5 30 90.0
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 3.0e-07 58.5 61 55.7
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 3.0e-07 58.5 61 55.7
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 3.0e-07 58.5 61 55.7
COL.COLO4_05032 Corchorus olitorius HOM05D003560 ORTHO05D004500 4.0e-07 58.2 61 55.7
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 4.0e-07 58.2 61 52.5
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 4.0e-07 58.2 66 48.5
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 4.0e-07 58.2 67 49.3
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 5.2e-07 57.8 66 50.0
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 5.2e-07 57.8 66 50.0
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 5.2e-07 57.8 61 55.7
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 6.8e-07 57.4 66 48.5
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 6.8e-07 57.4 66 48.5
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 6.8e-07 57.4 66 48.5
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 6.8e-07 57.4 66 51.5
CiPaw.14G018000 Carya illinoinensis HOM05D007841 ORTHO05D009919 6.8e-07 57.4 30 90.0
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 6.8e-07 57.4 61 54.1
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 6.8e-07 57.4 64 53.1
Hund17114 Selenicereus undatus HOM05D007841 ORTHO05D009919 6.8e-07 57.4 45 64.4
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 8.9e-07 57.0 61 50.8
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 8.9e-07 57.0 66 48.5
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 8.9e-07 57.0 66 50.0
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 8.9e-07 57.0 66 48.5
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 8.9e-07 57.0 66 50.0
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 8.9e-07 57.0 62 53.2
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 8.9e-07 57.0 57 54.4
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 1.2e-06 56.6 61 54.1
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 1.2e-06 56.6 61 54.1
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 1.2e-06 56.6 66 48.5
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 1.2e-06 56.6 61 52.5
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 1.5e-06 56.2 66 50.0
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 1.5e-06 56.2 69 46.4
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 1.5e-06 56.2 61 54.1
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 1.5e-06 56.2 61 54.1
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 1.5e-06 56.2 36 66.7
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 2.0e-06 55.8 66 51.5
Gohir.A12G098200 Gossypium hirsutum HOM05D007841 ORTHO05D009919 2.0e-06 55.8 30 83.3
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 2.0e-06 55.8 66 51.5
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 2.0e-06 55.8 66 51.5
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 2.0e-06 55.8 60 51.7
Thecc.01G400700 Theobroma cacao HOM05D007841 ORTHO05D009919 2.0e-06 55.8 62 56.5
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 2.0e-06 55.8 61 54.1
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 2.0e-06 55.8 61 54.1
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.6e-06 55.5 61 54.1
PGR004G1954 Punica granatum HOM05D007841 ORTHO05D009919 2.6e-06 55.5 28 92.9
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 2.6e-06 55.5 61 52.5
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 3.4e-06 55.1 61 54.1
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 3.4e-06 55.1 61 52.5
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 3.4e-06 55.1 61 52.5
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 3.4e-06 55.1 61 52.5
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 4.4e-06 54.7 61 52.5
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 4.4e-06 54.7 63 55.6
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 4.4e-06 54.7 61 52.5
MD02G1221100 Malus domestica HOM05D007841 ORTHO05D009919 4.4e-06 54.7 30 86.7
Manes.05G057100 Manihot esculenta HOM05D007841 ORTHO05D009919 4.4e-06 54.7 30 83.3
Prupe.2G120100 Prunus persica HOM05D007841 ORTHO05D009919 4.4e-06 54.7 30 83.3
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 5.7e-06 54.3 61 52.5
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 5.7e-06 54.3 38 68.4
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 5.7e-06 54.3 30 83.3
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 5.7e-06 54.3 61 50.8
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 7.5e-06 53.9 60 48.3
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 7.5e-06 53.9 62 46.8
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 7.5e-06 53.9 66 47.0
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 7.5e-06 53.9 61 50.8
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 7.5e-06 53.9 61 50.8
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 7.5e-06 53.9 60 50.0
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 7.5e-06 53.9 62 50.0


User provided reference genes

Program Settings