Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.1e-82 307.8 163 100.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.9e-74 281.6 163 93.9
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 8.5e-69 263.8 163 89.6
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.3e-53 213.4 173 71.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 4.2e-52 208.4 163 74.2
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.7e-51 204.9 166 72.3
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 6.1e-51 204.5 169 71.0
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.8e-50 203.0 166 68.7
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.8e-50 203.0 166 74.1
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 5.2e-50 201.4 182 66.5
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 8.8e-50 200.7 166 68.7
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 7.4e-49 197.6 169 71.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.1e-47 193.7 162 69.1
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 3.1e-47 192.2 170 67.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 5.3e-47 191.4 162 67.9
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 5.3e-47 191.4 168 68.5
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 1.2e-46 190.3 183 61.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.6e-46 189.9 170 64.7
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.0e-46 189.5 171 65.5
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.0e-46 189.5 194 59.8
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.6e-46 189.1 166 68.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 3.5e-46 188.7 169 66.3
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 4.5e-46 188.3 175 64.0
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 1.7e-45 186.4 171 66.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.7e-45 186.4 171 68.4
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 5.0e-45 184.9 163 66.3
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 6.5e-45 184.5 178 64.6
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-44 183.7 179 62.0
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.9e-44 183.0 167 66.5
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 3.2e-44 182.2 177 59.9
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 5.5e-44 181.4 169 67.5
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 5.5e-44 181.4 178 60.7
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 5.5e-44 181.4 184 60.3
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 5.5e-44 181.4 183 60.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.6e-43 179.9 184 59.8
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-43 179.9 167 63.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.6e-43 179.9 167 64.1
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 3.6e-43 178.7 181 59.7
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.7e-43 178.3 174 65.5
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.7e-43 178.3 163 66.9
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 6.1e-43 177.9 163 66.9
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 8.0e-43 177.6 175 60.6
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 8.0e-43 177.6 183 60.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 8.0e-43 177.6 170 64.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-42 176.8 193 56.5
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.8e-42 176.4 162 64.2
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.8e-42 176.4 165 62.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 3.0e-42 175.6 167 65.3
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.5e-41 173.3 176 60.8
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.4e-41 172.2 190 57.4
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 1.3e-40 170.2 174 60.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 2.8e-40 169.1 201 57.2
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 3.7e-40 168.7 186 60.8
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 6.3e-40 167.9 190 57.9
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.4e-39 166.8 190 58.9
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 9.1e-39 164.1 201 53.2
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 5.9e-38 161.4 181 59.7
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.8e-37 158.7 169 58.0
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.0e-37 158.3 165 58.2
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 5.0e-37 158.3 181 59.1
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.5e-36 156.8 212 51.4
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.5e-36 156.8 163 60.1
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 1.9e-36 156.4 174 59.2
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.5e-36 156.0 224 50.0
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.2e-36 155.6 169 58.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 4.2e-36 155.2 181 56.4
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 9.4e-36 154.1 181 57.5
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 6.1e-35 151.4 169 55.6
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.4e-34 150.2 165 59.4
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.3e-34 149.4 172 57.6
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 3.0e-34 149.1 182 51.6
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 5.7e-33 144.8 182 54.9
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.8e-32 142.5 162 53.7
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.7e-32 142.1 166 55.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 4.1e-31 138.7 143 61.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.0e-29 134.0 165 50.9
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.3e-29 133.7 163 50.9
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.0e-29 131.7 167 53.3
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 9.5e-28 127.5 172 51.7
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 3.6e-27 125.6 162 50.0
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 4.7e-27 125.2 211 44.5
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.3e-24 117.1 109 57.8
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 1.1e-23 114.0 168 46.4
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 2.4e-23 112.8 148 52.0
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 3.2e-23 112.5 138 53.6
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 4.1e-23 112.1 151 53.0
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.4e-23 111.7 61 91.8
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 7.0e-23 111.3 121 57.0
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.2e-23 110.9 61 91.8
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 2.7e-22 109.4 160 48.8
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.3e-21 107.1 60 91.7
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 5.0e-21 105.1 119 57.1
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 5.0e-21 105.1 55 96.4
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 5.0e-21 105.1 55 96.4
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 5.0e-21 105.1 55 96.4
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 5.0e-21 105.1 55 96.4
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 6.6e-21 104.8 56 92.9
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.1e-20 104.0 55 94.5
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.9e-20 103.2 185 43.8
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 1.9e-20 103.2 55 94.5
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.5e-20 102.8 55 92.7
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 2.5e-20 102.8 55 92.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.5e-20 102.8 54 96.3
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 9.5e-20 100.9 55 90.9
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.6e-19 100.1 54 94.4
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 2.1e-19 99.8 152 49.3
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.0e-18 97.4 116 54.3
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 4.0e-18 95.5 127 52.0
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 5.2e-18 95.1 123 49.6
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 9.8e-17 90.9 120 48.3
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 2.7e-14 82.8 163 39.3
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 2.7e-14 82.8 163 39.3
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 6.0e-14 81.6 119 51.3
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 5.0e-13 78.6 120 45.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 8.6e-13 77.8 50 80.0
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.1e-12 77.4 134 41.8
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.5e-12 76.3 163 38.0
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 4.3e-12 75.5 145 43.4
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 6.2e-11 71.6 39 94.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.1e-10 70.9 132 37.9
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.1e-10 70.9 39 92.3
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 1.4e-10 70.5 107 46.7
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.0e-09 66.6 45 77.8
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 5.8e-09 65.1 36 91.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 2.9e-08 62.8 122 39.3
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 9.2e-07 57.8 81 49.4
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.2e-06 57.4 35 82.9


User provided reference genes

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