Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.8e-228 795.0 431 100.0
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.0e-193 677.9 450 85.8
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.6e-122 443.7 456 59.0
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.4e-109 399.4 432 53.9
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.9e-108 395.6 457 53.0
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.9e-107 393.7 425 53.4
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.4e-107 393.3 426 52.3
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.1e-106 390.2 429 53.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 5.1e-105 385.6 452 50.7
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 9.6e-104 381.3 454 50.2
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.1e-103 380.2 424 50.9
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.1e-102 377.9 458 50.2
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.2e-101 374.4 431 51.0
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.4e-101 372.9 455 49.2
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.4e-100 368.2 446 50.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.6e-98 364.0 454 48.0
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.5e-98 362.8 460 49.6
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.6e-98 362.5 431 50.3
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.0e-97 361.3 427 49.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.9e-97 359.4 419 51.6
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.5e-96 357.5 427 50.6
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.9e-96 357.1 429 49.4
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.9e-96 357.1 432 48.8
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.3e-96 355.9 427 48.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 6.2e-95 352.1 429 49.2
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.8e-94 350.5 450 47.1
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 5.3e-94 349.0 404 49.0
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.6e-93 346.7 418 49.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.8e-92 342.8 428 47.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.8e-92 342.8 426 47.4
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 5.0e-92 342.4 481 44.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.5e-91 340.1 422 48.8
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 4.2e-91 339.3 454 45.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.2e-90 337.8 427 48.0
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.5e-90 336.3 427 45.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.6e-90 335.9 430 47.0
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.1e-90 335.5 458 46.1
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.8e-89 334.0 437 45.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.0e-89 333.2 423 45.4
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.9e-89 332.8 444 46.6
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.5e-88 330.9 424 45.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.9e-88 330.5 440 46.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.5e-88 330.1 418 49.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.3e-88 329.7 444 46.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.3e-88 329.7 427 48.2
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.7e-88 328.9 425 44.9
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.7e-88 328.9 425 44.9
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 5.7e-88 328.9 425 48.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 7.4e-88 328.6 424 46.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-87 327.8 425 48.7
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.6e-87 327.4 464 45.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-87 326.6 420 48.8
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.7e-87 326.2 458 45.4
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.1e-86 323.2 428 46.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 6.9e-86 322.0 429 46.2
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 9.0e-86 321.6 426 45.1
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.2e-85 321.2 425 45.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.2e-85 321.2 428 46.7
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-85 321.2 428 46.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.6e-85 320.1 438 45.2
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 3.4e-85 319.7 438 45.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.7e-85 318.5 427 45.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.0e-84 318.2 427 45.0
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.0e-84 318.2 450 45.8
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.7e-84 317.4 450 42.9
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.2e-84 317.0 428 46.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.5e-84 315.5 429 44.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.2e-83 312.8 429 44.1
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 9.4e-83 311.6 439 44.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.1e-82 310.5 425 43.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 4.6e-82 309.3 423 43.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.6e-82 309.3 425 42.8
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 6.1e-82 308.9 414 44.7
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.8e-81 307.4 422 44.1
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.9e-81 306.2 453 47.5
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.5e-80 303.5 427 43.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 2.5e-80 303.5 435 44.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.5e-80 303.5 429 45.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 3.3e-80 303.1 422 43.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 5.7e-80 302.4 426 42.7
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.2e-79 300.4 435 43.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.3e-79 298.9 424 42.7
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.4e-78 297.7 423 43.0
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 5.3e-78 295.8 428 43.0
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.5e-77 294.3 280 56.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.5e-77 294.3 428 45.3
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.0e-77 293.9 425 42.1
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.6e-77 293.5 425 42.1
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.4e-77 293.1 425 41.2
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 3.4e-77 293.1 425 41.2
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.9e-77 292.4 425 41.2
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.9e-76 290.0 454 40.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.8e-76 289.7 427 44.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 5.0e-76 289.3 421 44.4
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-75 287.7 432 42.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-75 287.0 437 42.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.1e-74 283.9 459 41.2
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.4e-73 281.2 422 41.5
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 5.1e-73 279.3 422 41.5
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.7e-73 278.9 429 44.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.1e-72 278.1 424 41.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.3e-72 276.6 415 40.7
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 7.4e-72 275.4 342 46.8
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.1e-70 271.6 424 39.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 3.1e-70 270.0 432 41.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.3e-70 269.2 450 38.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.5e-69 267.7 427 43.1
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 5.9e-69 265.8 465 38.9
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 7.7e-69 265.4 420 39.3
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.3e-68 264.6 434 41.2
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-68 264.2 428 41.6
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.1e-67 261.5 431 39.4
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.6e-66 257.7 427 38.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.7e-66 256.9 435 38.9
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 4.7e-66 256.1 427 36.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.6e-64 250.4 428 38.3
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.4e-64 249.6 428 38.3
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.3e-63 248.1 432 38.9
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.3e-63 248.1 428 37.9
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-62 244.2 246 55.7
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.1e-62 243.4 391 39.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 4.1e-62 243.0 400 39.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 6.5e-60 235.7 438 37.4
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-56 224.6 385 37.7
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.2e-51 206.5 414 34.8
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.2e-48 198.4 398 35.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.3e-44 184.9 148 64.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.3e-43 180.3 146 63.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.8e-42 177.2 436 32.8
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-41 172.6 180 54.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 6.8e-41 172.6 359 35.1
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 7.0e-38 162.5 246 46.3
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.9e-35 154.5 339 34.2
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-33 147.5 139 57.6
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.9e-27 127.9 162 47.5
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.9e-27 127.9 401 28.4
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.8e-26 124.0 349 28.7
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.6e-26 123.6 188 41.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-24 117.9 200 37.0
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.3e-23 115.2 345 26.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-23 115.2 216 37.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-21 108.6 127 45.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.6e-21 108.2 463 25.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.1e-20 103.2 119 44.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 6.6e-20 102.8 434 25.8
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.5e-19 101.7 139 36.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-19 101.3 139 39.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.8e-17 94.7 135 37.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-17 94.0 111 48.6
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.6e-16 90.9 85 60.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 4.4e-16 90.1 133 36.8
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 9.9e-16 89.0 74 62.2
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.3e-15 88.6 123 44.7
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.4e-14 85.1 123 40.7
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.7e-13 80.9 432 21.8
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.5e-13 80.5 116 45.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.7e-12 78.2 73 54.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.9e-11 74.7 88 37.5
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.3e-11 73.6 202 33.2
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.6e-10 71.6 86 37.2
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.2e-10 69.7 264 29.9
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-09 66.2 64 54.7
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-09 66.2 64 54.7
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 9.9e-08 62.4 224 23.7
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 7.1e-06 56.2 269 21.9


User provided reference genes

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