Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 9.0e-72 273.5 137 100.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.5e-53 211.1 129 77.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 7.1e-53 210.7 131 75.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 9.3e-53 210.3 128 76.6
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 9.3e-53 210.3 129 78.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.6e-52 209.5 122 81.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.6e-52 208.0 127 80.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 6.0e-52 207.6 128 78.9
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 6.0e-52 207.6 124 79.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-51 206.8 124 78.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.3e-51 205.7 129 75.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.0e-51 205.3 126 76.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.1e-51 204.5 137 74.5
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 6.7e-51 204.1 121 77.7
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 6.7e-51 204.1 124 79.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.1e-50 203.4 121 77.7
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.9e-50 202.6 123 78.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.9e-50 202.6 127 75.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 2.5e-50 202.2 120 80.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.3e-50 201.8 122 78.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.3e-50 201.4 124 77.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 5.7e-50 201.1 124 78.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 5.7e-50 201.1 124 77.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.7e-50 201.1 123 79.7
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.7e-50 201.1 123 79.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 9.7e-50 200.3 124 75.0
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.7e-50 200.3 120 78.3
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-49 199.9 120 80.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.6e-49 199.5 125 76.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.6e-49 199.5 123 75.6
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.8e-49 198.7 127 75.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.8e-49 198.7 120 80.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.7e-49 198.4 125 75.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.3e-49 197.6 135 69.6
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 6.3e-49 197.6 120 81.7
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 8.2e-49 197.2 126 74.6
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.1e-48 196.8 134 71.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.1e-48 196.8 120 79.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.1e-48 196.8 127 76.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.4e-48 196.4 120 80.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.4e-48 196.4 123 74.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.4e-48 196.4 125 75.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.8e-48 196.1 129 73.6
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.8e-48 196.1 125 73.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.8e-48 196.1 120 80.8
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.4e-48 195.7 128 71.9
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.1e-48 195.3 124 74.2
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 4.1e-48 194.9 120 81.7
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.1e-48 194.9 120 78.3
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.1e-48 194.9 120 78.3
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.1e-48 194.9 120 78.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 6.9e-48 194.1 124 72.6
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.9e-48 194.1 120 77.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.9e-48 194.1 123 73.2
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-47 193.4 119 78.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.2e-47 193.4 144 66.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.2e-47 193.4 127 73.2
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.5e-47 193.0 129 70.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.5e-47 191.4 123 73.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-46 190.3 120 76.7
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.9e-46 188.7 126 70.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.0e-46 188.0 127 71.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.0e-46 188.0 127 71.7
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 5.0e-46 188.0 123 74.8
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 8.5e-46 187.2 121 72.7
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-45 186.8 120 77.5
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-45 186.0 120 77.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.9e-45 186.0 120 71.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-45 186.0 124 74.2
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-45 185.7 120 75.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.5e-45 185.7 120 75.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.2e-45 185.3 130 70.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-45 184.5 120 75.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.4e-45 183.7 120 75.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 4.6e-44 181.4 130 68.5
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.6e-44 181.4 119 73.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 7.9e-44 180.6 130 68.5
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.0e-43 180.3 134 64.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-43 179.9 122 70.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.8e-43 179.5 120 70.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.8e-43 179.5 118 73.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.3e-43 179.1 122 73.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.0e-43 178.7 132 65.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.0e-43 178.7 125 69.6
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 3.9e-43 178.3 112 74.1
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.7e-43 177.6 130 66.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 8.8e-43 177.2 124 70.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.5e-42 176.4 132 66.7
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.3e-42 175.3 123 68.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 125 66.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 128 64.8
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 9.7e-42 173.7 127 63.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-41 173.3 130 64.6
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.2e-41 172.6 122 67.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.8e-41 172.2 127 65.4
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.7e-41 171.8 128 64.8
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 6.3e-41 171.0 122 69.7
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 6.3e-41 171.0 122 64.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.4e-40 169.9 105 77.1
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-40 169.9 127 63.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.4e-40 169.1 112 69.6
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.4e-40 169.1 125 64.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.1e-40 168.7 120 64.2
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.1e-40 168.3 122 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 6.9e-40 167.5 119 65.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 6.9e-40 167.5 121 66.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 9.1e-40 167.2 130 66.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.5e-39 166.4 112 70.5
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.4e-39 165.2 127 65.4
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.9e-39 164.5 124 58.9
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 7.7e-39 164.1 128 62.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.0e-38 163.7 122 64.8
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.2e-38 162.5 117 67.5
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.9e-38 162.2 126 62.7
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.9e-38 162.2 128 62.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 3.8e-38 161.8 121 64.5
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 5.0e-38 161.4 123 62.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.0e-38 161.4 122 62.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 6.5e-38 161.0 123 62.6
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 6.5e-38 161.0 121 63.6
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.1e-37 160.2 131 63.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 63.4
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.5e-37 159.1 123 61.8
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.2e-37 158.3 129 61.2
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.2e-37 157.5 108 70.4
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.4e-37 157.1 104 75.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 9.4e-37 157.1 122 60.7
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.9e-36 154.1 122 61.5
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 7.9e-36 154.1 118 63.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-35 153.3 118 62.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.4e-35 153.3 118 62.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.8e-35 152.9 118 63.6
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.8e-35 152.9 121 62.8
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.3e-35 152.5 118 64.4
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.3e-35 152.5 118 64.4
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.0e-35 152.1 120 63.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.9e-35 151.8 118 63.6
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.9e-35 151.8 118 63.6
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.9e-35 151.8 118 63.6
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.1e-35 151.4 123 59.3
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 6.7e-35 151.0 119 62.2
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 8.8e-35 150.6 118 62.7
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-34 149.8 130 58.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-34 149.4 128 59.4
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 4.4e-34 148.3 126 57.9
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.7e-34 147.9 130 57.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.4e-34 147.5 130 58.5
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 9.7e-34 147.1 124 58.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.3e-33 146.7 122 59.8
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 6.3e-33 144.4 126 57.9
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 8.2e-33 144.1 129 60.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.4e-32 143.3 124 58.9
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-31 140.2 124 56.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.5e-31 139.8 107 63.6
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.9e-31 137.9 130 53.8
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.0e-30 137.1 132 53.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.2e-27 124.8 123 52.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.8e-24 116.3 66 80.3
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.8e-24 116.3 79 69.6
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.8e-19 99.8 65 69.2
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.8e-19 99.8 65 69.2
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.0e-19 99.0 62 72.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.8e-19 97.8 65 70.8
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 5.7e-18 94.7 110 43.6
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-16 90.5 53 77.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.4e-16 90.1 82 59.8
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-16 89.7 65 66.2
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.1e-16 88.6 62 69.4
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 7.0e-16 87.8 62 69.4
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.1e-16 87.4 53 79.2
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.5e-15 85.5 60 68.3
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-14 83.6 119 40.3
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.9e-13 79.7 59 67.8
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.5e-13 79.3 62 58.1
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.7e-12 75.9 69 59.4
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.0e-11 73.9 51 72.5
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.3e-09 67.0 64 51.6
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 3.5e-07 58.9 32 75.0


User provided reference genes

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