Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.8e-190 669.1 341 100.0
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.1e-182 641.7 341 96.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.1e-110 404.1 340 60.9
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 8.7e-108 394.4 336 59.5
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 6.2e-106 388.3 341 59.2
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 6.2e-106 388.3 337 59.9
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 5.3e-105 385.2 337 60.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.4e-104 382.5 337 59.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 7.6e-104 381.3 343 59.2
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 9.9e-104 380.9 337 59.1
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.3e-103 380.6 341 58.1
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.9e-103 379.4 335 58.5
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.8e-103 379.0 335 57.6
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.4e-102 377.1 337 57.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 4.2e-102 375.6 337 58.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.2e-102 375.6 337 57.6
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 9.3e-102 374.4 337 57.3
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.6e-101 373.6 337 57.3
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.6e-101 373.6 335 56.4
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.5e-101 372.5 335 56.7
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 7.9e-101 371.3 337 56.7
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.0e-100 370.9 335 56.4
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 3.0e-100 369.4 336 54.5
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 3.9e-100 369.0 338 57.1
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 5.1e-100 368.6 336 57.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 8.7e-100 367.9 337 54.9
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 8.7e-100 367.9 335 55.8
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 8.7e-100 367.9 337 54.6
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.1e-99 367.5 338 55.3
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 7.4e-99 364.8 337 56.7
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 9.6e-99 364.4 335 55.2
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 6.2e-98 361.7 337 57.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.1e-97 360.9 337 54.3
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.8e-97 360.1 338 54.7
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 9.0e-97 357.8 338 55.3
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.5e-96 357.1 336 53.6
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.5e-96 357.1 337 53.4
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.4e-96 355.9 335 54.3
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 7.6e-96 354.8 335 54.9
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.3e-95 354.0 337 52.5
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.3e-95 354.0 335 54.9
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.7e-95 353.6 333 55.3
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.7e-95 353.6 335 54.6
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.1e-94 350.9 335 54.6
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.4e-94 350.5 341 54.3
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.9e-94 350.1 366 50.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 5.5e-94 348.6 336 55.1
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.2e-93 347.4 335 53.1
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.6e-93 347.1 342 54.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 4.6e-93 345.5 336 52.4
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.3e-92 344.0 322 56.2
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.3e-92 344.0 315 54.0
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.8e-92 343.6 341 52.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 8.7e-92 341.3 337 54.0
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.3e-91 339.3 337 51.3
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 4.3e-91 339.0 361 52.6
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.6e-90 337.0 369 50.4
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.1e-90 336.7 336 53.0
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 6.3e-90 335.1 355 50.4
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.4e-89 334.0 336 52.7
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 2.4e-89 333.2 334 50.6
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 2.4e-89 333.2 336 52.4
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 3.1e-89 332.8 334 50.3
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 4.1e-89 332.4 334 50.9
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.4e-88 329.3 338 52.4
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 5.0e-87 325.5 334 49.4
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.2e-85 320.9 357 50.7
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.7e-85 319.7 333 53.2
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 4.6e-85 318.9 334 51.8
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.0e-84 317.8 339 51.0
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-84 316.2 335 50.7
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.1e-83 314.3 341 51.0
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.1e-83 314.3 335 50.7
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.5e-83 313.9 361 49.0
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 2.5e-83 313.2 346 49.7
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 4.3e-83 312.4 337 51.3
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 9.7e-83 311.2 334 50.9
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.6e-82 310.5 333 51.4
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.2e-82 310.1 337 50.7
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.1e-81 307.8 368 47.0
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 5.3e-81 305.4 333 50.8
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 3.4e-80 302.8 331 48.0
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.0e-79 301.2 333 50.2
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 3.8e-79 299.3 333 49.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.9e-78 297.0 336 48.5
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 5.5e-78 295.4 334 49.1
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 5.5e-78 295.4 334 49.4
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.6e-77 293.9 335 46.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 3.6e-77 292.7 334 48.8
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.8e-76 290.4 287 52.3
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.1e-75 287.7 334 48.2
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 5.7e-75 285.4 326 48.8
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.3e-74 284.3 267 56.6
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 8.2e-74 281.6 300 53.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.4e-72 276.2 175 82.3
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.2e-71 273.5 334 47.6
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.9e-71 273.1 306 47.4
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 5.5e-70 268.9 356 45.2
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.2e-69 267.7 249 56.6
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 5.2e-68 262.3 319 44.5
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 8.8e-68 261.5 163 84.0
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 7.4e-67 258.5 332 44.0
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.0e-55 221.5 337 41.2
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.3e-55 221.1 338 40.5
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 7.2e-54 215.3 314 40.1
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 3.6e-53 213.0 332 37.7
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.2e-51 208.0 340 37.6
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 2.4e-49 200.3 322 38.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 3.0e-44 183.3 352 35.2
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 7.5e-43 178.7 208 47.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.6e-40 171.0 205 48.8
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 3.6e-37 159.8 188 43.6
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 6.4e-34 149.1 188 47.3
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 6.2e-29 132.5 157 46.5
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 6.2e-29 132.5 157 46.5
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.0e-28 131.7 136 50.7
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 2.9e-26 123.6 346 30.1
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 9.2e-25 118.6 123 43.9
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 5.0e-23 112.8 313 28.4
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.8e-20 102.4 162 39.5
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.0e-19 100.9 143 39.2
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 4.4e-19 99.8 113 48.7
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 3.7e-18 96.7 126 45.2
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.1e-13 80.9 73 53.4
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.2e-13 79.3 108 41.7
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.0e-08 62.8 36 77.8


User provided reference genes

Program Settings