Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.0e-204 715.7 398 100.0
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.8e-163 578.6 325 86.2
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.1e-162 577.0 326 85.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 4.2e-162 575.1 325 85.2
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 7.1e-162 574.3 325 85.2
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.3e-162 573.9 326 85.0
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.6e-161 571.6 325 84.0
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 6.1e-161 571.2 325 84.3
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 6.1e-161 571.2 325 84.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 7.9e-161 570.9 325 84.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.0e-160 570.5 322 85.7
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.8e-160 569.7 325 83.7
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.3e-160 569.3 320 86.6
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.9e-160 568.5 325 83.7
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.7e-160 567.8 325 83.1
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 6.7e-160 567.8 325 83.7
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 6.7e-160 567.8 319 85.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.7e-159 564.7 325 83.7
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.3e-158 563.5 327 83.8
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.2e-158 562.8 322 83.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.8e-158 562.4 325 82.8
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.7e-158 562.0 325 83.4
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 4.8e-158 561.6 322 84.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.1e-157 560.5 320 84.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.4e-157 560.1 326 83.4
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.4e-157 559.3 324 83.3
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 4.1e-157 558.5 324 84.0
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.0e-156 556.2 325 82.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 5.9e-156 554.7 325 83.4
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-155 553.5 325 82.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.2e-155 552.7 325 82.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.2e-155 552.7 325 81.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.5e-155 551.2 325 81.8
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.5e-155 550.8 320 82.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 8.5e-155 550.8 323 83.0
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.9e-154 549.7 362 75.7
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.9e-154 549.7 326 82.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 7.2e-154 547.7 324 81.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 9.4e-154 547.4 328 82.3
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.2e-153 547.0 368 74.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.6e-153 546.6 324 81.8
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.7e-153 545.8 320 82.5
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 4.6e-153 545.0 318 83.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 4.6e-153 545.0 323 82.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.1e-153 544.7 320 82.2
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.1e-153 544.7 323 81.7
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 6.1e-153 544.7 324 81.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.0e-152 543.9 320 80.9
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-152 543.1 361 74.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 3.9e-152 542.0 322 78.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.9e-152 542.0 323 80.8
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.1e-151 540.4 322 80.4
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-151 540.0 320 83.1
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.5e-151 540.0 320 82.2
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 4.3e-151 538.5 322 80.1
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.7e-151 538.1 323 80.8
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.7e-151 538.1 325 79.7
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 7.4e-151 537.7 323 80.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 9.7e-151 537.3 322 80.1
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.2e-150 536.2 325 79.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.8e-150 535.8 325 80.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-150 535.4 333 79.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.8e-150 535.0 320 80.3
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 8.2e-150 534.3 316 81.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-149 533.9 323 80.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-149 533.5 323 79.9
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.4e-149 533.5 323 79.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.4e-149 533.5 321 80.4
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.4e-149 533.5 323 80.2
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 5.3e-149 531.6 322 78.0
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 9.1e-149 530.8 321 79.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.4e-148 528.9 317 81.1
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 4.5e-148 528.5 326 78.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.0e-147 527.3 325 79.7
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-147 526.9 333 78.4
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.7e-147 526.6 326 77.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.2e-147 526.2 321 79.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 6.5e-147 524.6 318 79.6
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 6.5e-147 524.6 322 78.0
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 8.5e-147 524.2 316 80.7
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 8.5e-147 524.2 316 80.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.1e-146 523.9 326 78.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.2e-145 520.4 362 71.5
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.4e-144 516.9 320 77.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.8e-144 516.5 394 68.8
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.0e-144 515.8 320 77.8
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 6.7e-144 514.6 311 81.4
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.6e-143 512.7 320 78.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.3e-142 510.4 314 79.3
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-142 509.2 304 81.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 9.4e-138 494.2 325 75.4
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.8e-136 490.0 323 73.1
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 5.7e-135 485.0 323 75.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.5e-132 475.7 316 73.1
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.6e-129 466.8 324 70.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.0e-128 462.6 326 69.0
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 9.7e-127 457.6 331 67.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.1e-125 454.1 319 69.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.5e-122 443.7 250 85.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.0e-120 436.0 250 83.2
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.2e-119 434.1 243 84.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.2e-118 429.9 250 82.0
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 2.8e-118 429.5 249 83.9
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 3.3e-114 416.0 362 62.2
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 6.1e-113 411.8 311 66.2
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.2e-112 408.7 321 67.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.8e-111 404.4 299 68.2
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.2e-110 403.3 324 64.2
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 8.6e-107 391.3 242 74.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.0e-95 353.6 323 56.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.4e-88 330.9 198 79.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-85 320.5 232 68.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.7e-76 290.0 215 70.7
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 1.3e-73 281.2 316 48.4
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.6e-66 255.8 263 49.0
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.3e-65 254.6 197 64.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.6e-63 246.9 136 86.8
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.7e-62 244.2 341 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.1e-61 241.5 232 54.3
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.1e-61 241.5 137 82.5
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.6e-55 220.3 130 78.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.3e-42 176.8 120 73.3
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 9.7e-42 175.3 120 72.5
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-41 172.6 122 72.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.1e-40 170.2 120 70.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 7.7e-39 165.6 102 79.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-38 164.5 113 72.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-38 164.5 113 72.6
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-37 161.0 113 70.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-35 152.1 167 47.3
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 9.7e-34 148.7 107 70.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.7e-33 146.7 199 47.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.3e-25 121.7 83 71.1
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 4.8e-25 119.8 73 78.1
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.6e-23 114.0 68 80.9
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 7.7e-23 112.5 78 70.5
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.9e-21 107.8 195 39.5
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-20 105.1 80 68.8
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.6e-20 104.8 77 67.5
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.7e-20 103.2 61 83.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 5.2e-19 99.8 66 75.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 5.3e-16 89.7 62 71.0
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 2.0e-15 87.8 180 33.3
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.7e-12 77.4 46 78.3
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 6.8e-11 72.8 67 58.2
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.3e-09 68.6 76 51.3
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 1.1e-08 65.5 165 28.5
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 7.0e-08 62.8 54 55.6
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 5.9e-07 59.7 60 55.0
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.3e-06 58.5 162 29.6
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 2.9e-06 57.4 165 27.9


User provided reference genes

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