Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.4e-188 660.6 335 100.0
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.1e-160 570.1 306 96.7
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.3e-160 568.5 306 93.8
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.6e-152 541.2 287 97.9
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.8e-149 531.2 306 89.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.0e-113 414.1 231 92.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 4.0e-89 332.4 305 55.1
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 8.9e-89 331.3 309 52.8
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.0e-88 330.1 296 56.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 2.2e-87 326.6 310 52.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 3.7e-87 325.9 306 56.5
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.3e-87 324.7 302 51.7
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.4e-86 323.9 318 53.8
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 9.2e-86 321.2 299 54.2
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.9e-84 315.8 304 55.6
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.0e-84 315.5 307 52.8
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 5.0e-84 315.5 306 53.6
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 8.6e-84 314.7 305 53.1
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.5e-83 313.9 313 53.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 7.3e-83 311.6 300 55.0
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 7.3e-83 311.6 305 52.5
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.2e-82 310.8 301 53.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-82 310.8 305 54.4
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 2.1e-82 310.1 306 52.0
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 3.6e-82 309.3 306 53.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 6.2e-82 308.5 284 56.0
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.8e-81 307.0 307 52.1
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 3.1e-81 306.2 304 54.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.6e-80 303.1 306 52.9
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.4e-80 302.8 306 51.6
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.4e-80 302.8 332 49.4
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.8e-80 302.0 307 51.1
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.8e-80 302.0 332 48.8
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.9e-79 299.7 334 50.3
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.4e-79 298.5 307 49.5
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-78 297.0 336 51.2
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.4e-78 296.6 299 51.2
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.1e-78 295.8 300 51.3
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.8e-77 291.6 329 49.2
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 7.8e-77 291.6 300 51.0
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.9e-76 289.3 303 50.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 4.3e-75 285.8 304 51.0
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 2.8e-74 283.1 303 50.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.4e-73 280.8 303 50.5
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.1e-73 279.6 303 51.2
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 4.0e-73 279.3 304 49.7
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-73 279.3 304 49.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.5e-72 277.3 299 50.8
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 7.5e-72 275.0 298 50.7
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.1e-70 271.2 298 49.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 5.4e-70 268.9 325 46.8
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 7.1e-70 268.5 298 47.7
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 7.8e-69 265.0 300 49.3
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.0e-68 264.6 301 49.5
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.3e-68 264.2 285 49.5
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.3e-68 263.5 305 46.2
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-68 263.1 304 47.0
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 6.6e-68 261.9 325 48.3
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.1e-67 261.2 299 48.8
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.5e-67 260.8 307 49.2
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.3e-67 259.2 285 49.8
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 5.6e-67 258.8 299 45.2
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.6e-66 257.3 300 47.3
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.1e-66 256.9 301 48.2
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.1e-66 256.9 301 48.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.8e-66 256.5 302 46.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.6e-66 256.1 292 49.0
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 8.1e-66 255.0 285 49.5
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.4e-65 254.2 301 48.2
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.4e-64 249.6 291 47.8
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.2e-63 246.9 297 45.8
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.9e-63 246.5 422 37.0
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.1e-62 242.7 302 46.0
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 5.4e-62 242.3 297 45.5
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.4e-62 242.3 294 43.9
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.7e-61 240.0 293 45.1
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.6e-60 235.3 290 47.6
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 3.1e-57 226.5 299 43.5
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 6.9e-57 225.3 307 43.6
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 2.0e-56 223.8 305 43.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.0e-56 223.8 306 42.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-55 220.7 291 45.4
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.9e-55 219.9 298 43.3
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.9e-55 219.2 306 41.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 4.9e-55 219.2 307 41.4
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.9e-54 217.2 301 42.2
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.2e-54 216.5 286 44.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.2e-54 216.1 296 41.6
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.2e-53 214.5 298 43.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.7e-53 213.4 259 44.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.7e-53 213.4 298 42.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.0e-52 211.5 295 43.4
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-52 211.1 254 45.7
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.3e-52 211.1 286 43.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.0e-52 209.9 302 40.4
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.9e-52 209.5 293 43.7
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 5.1e-52 209.1 313 39.3
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 6.6e-52 208.8 298 39.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.9e-51 207.2 299 38.5
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 4.3e-51 206.1 301 39.9
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 4.3e-51 206.1 283 43.1
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.6e-51 205.7 286 42.7
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.4e-49 201.1 294 42.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.8e-49 200.7 296 40.9
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.4e-49 200.3 297 37.7
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.1e-49 199.9 299 38.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-48 196.4 276 42.0
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.1e-46 191.4 301 37.2
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.4e-46 191.0 300 39.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 5.4e-46 189.1 298 39.6
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.5e-45 186.4 300 39.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.0e-45 185.7 221 44.8
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.8e-44 184.1 329 37.1
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.9e-44 183.0 293 38.6
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 5.1e-44 182.6 300 38.0
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 5.1e-44 182.6 209 48.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 7.4e-43 178.7 293 39.2
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 7.4e-43 178.7 306 38.2
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.8e-42 176.0 202 51.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.8e-42 176.0 202 51.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.2e-37 161.4 187 48.1
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 7.9e-37 158.7 239 38.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 8.2e-34 148.7 301 32.2
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.0e-28 130.2 236 36.0
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 2.8e-26 123.6 147 44.2
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.0e-24 117.5 242 34.3
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 3.4e-24 116.7 207 34.3
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.4e-24 116.7 172 40.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.9e-19 100.9 307 28.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 5.7e-19 99.4 149 42.3
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 4.1e-17 93.2 76 61.8
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.1e-12 76.3 104 38.5
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 9.1e-09 65.5 79 41.8
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-07 62.0 62 50.0
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-06 57.8 65 46.2


User provided reference genes

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