Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 2223.4 1108 100.0
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1722.2 1101 76.9
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1097 76.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1704.1 1108 75.6
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1099 75.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1699.5 1102 75.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1696.8 1099 75.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1691.0 1105 74.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1687.2 1103 76.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1099 74.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1103 75.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1108 74.8
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1678.7 1099 74.4
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1084 75.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1670.6 1101 74.8
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1102 74.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1100 73.8
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1107 74.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1092 74.4
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1105 74.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1092 74.3
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1651.7 1098 73.7
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1649.4 1092 73.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1646.7 1099 73.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1645.2 1100 73.0
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1098 73.4
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1171 70.2
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1092 73.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1639.8 1103 72.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1636.7 1101 72.4
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1099 72.4
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1635.9 1103 72.8
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1635.2 1171 70.1
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1634.0 1099 72.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1634.0 1104 72.9
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1633.6 1099 73.1
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1103 72.7
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1092 72.5
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1630.5 1096 73.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1098 73.4
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1629.0 1099 72.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1626.7 1092 72.1
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1626.3 1096 71.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1624.4 1092 72.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1623.2 1098 72.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1623.2 1099 72.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1622.1 1131 70.2
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1617.4 1101 72.8
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1092 71.9
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1614.0 1098 72.4
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1099 71.3
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1092 71.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1091 71.6
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1091 71.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1099 71.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1105 72.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1106 70.6
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1096 71.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1103 70.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1103 70.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1103 70.4
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1103 70.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1568.9 1099 69.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1099 69.6
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1078 70.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1109 70.2
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1561.6 1096 70.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1101 69.1
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1116 68.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1558.1 1103 69.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1099 69.2
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 1116 69.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1556.6 1099 68.9
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1555.4 1099 69.2
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1553.5 1126 68.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1550.0 1099 69.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1549.3 1099 68.8
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1549.3 1095 70.1
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1099 69.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1099 69.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 1095 70.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1545.0 1099 68.9
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1544.6 1099 68.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1107 69.0
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1101 68.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1099 68.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1099 69.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1099 68.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1538.1 1118 67.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1535.0 1098 68.1
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1533.9 1106 68.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1092 69.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1032 73.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1521.5 1169 65.3
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1093 68.3
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1518.1 999 73.8
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1114 68.5
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1515.4 1098 69.5
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1092 67.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1508.4 1093 67.8
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1504.6 1097 67.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1498.4 1118 66.6
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1492.2 1011 73.5
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1484.9 1069 68.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1099 66.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1459.5 1123 65.5
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1452.6 1015 71.6
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1440.6 990 70.9
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1432.2 1107 63.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1398.6 1096 64.9
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1330.5 1104 62.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1241.1 802 76.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1195.6 1105 53.4
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1158.7 1098 53.5
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1158.3 1095 53.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 1100 52.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1137.9 1137 51.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 726 75.9
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1126.7 704 78.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1101.3 686 77.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1089.3 760 69.9
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.8e-296 1022.3 840 59.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.3e-273 945.3 828 59.4
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.3e-266 923.7 624 73.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.8e-256 889.4 961 48.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.0e-239 831.2 644 65.8
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.5e-238 830.5 509 78.4
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.8e-229 799.3 632 63.3
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 6.3e-208 728.8 984 44.6
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.4e-175 620.5 590 54.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.9e-162 575.5 429 67.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 8.7e-141 505.8 318 76.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.7e-133 479.2 313 75.4
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.1e-126 458.0 393 61.1
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 8.8e-85 319.7 299 56.2
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.9e-80 304.7 244 60.2
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.1e-62 245.4 136 80.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.4e-58 232.6 205 59.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.0e-44 185.7 149 57.7
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 6.4e-35 154.1 210 44.3
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.4e-34 152.9 73 97.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.3e-31 141.7 141 50.4
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 7.3e-31 140.6 108 59.3
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.1e-29 135.2 156 46.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.9e-26 125.9 88 65.9
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.1e-25 122.5 97 62.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 9.3e-18 97.1 147 40.1
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 6.9e-13 80.9 47 78.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.4e-11 73.9 49 65.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 9.3e-10 70.5 81 45.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-09 68.6 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 5.7e-07 61.2 39 71.8


User provided reference genes

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