Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.0e-229 798.1 396 100.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.4e-112 410.6 395 56.5
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.4e-101 374.0 416 50.5
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.5e-100 369.0 404 51.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 4.5e-100 369.0 427 50.4
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-98 364.4 396 51.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.2e-98 362.5 401 50.1
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 8.0e-97 358.2 401 50.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.2e-96 355.5 400 50.5
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.6e-95 353.2 394 51.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.7e-94 349.4 400 50.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.7e-94 349.4 397 49.1
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.3e-94 348.2 402 48.8
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.8e-93 347.1 404 48.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 4.1e-93 345.9 397 51.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.9e-92 342.0 395 48.6
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.0e-91 341.3 398 50.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.1e-90 337.8 401 52.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-90 337.8 403 48.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.3e-90 335.1 407 49.4
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.6e-89 332.8 397 49.6
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.6e-89 332.8 392 50.3
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.1e-89 332.0 398 49.2
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.8e-88 330.5 352 52.3
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.1e-88 329.7 391 48.3
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 5.2e-88 328.9 400 48.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 8.9e-88 328.2 394 48.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.5e-87 327.4 394 48.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.4e-87 325.9 400 48.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.7e-86 322.8 392 47.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 6.4e-86 322.0 390 47.4
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 4.1e-85 319.3 379 49.3
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 9.2e-85 318.2 393 46.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.0e-84 317.0 406 44.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.7e-83 313.9 357 49.9
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.5e-82 310.1 362 49.7
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.6e-81 307.4 396 45.2
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.6e-81 306.2 393 45.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.6e-81 306.2 393 45.0
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 8.0e-81 305.1 384 45.1
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-80 304.7 397 44.6
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.1e-80 304.7 399 47.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 3.1e-80 303.1 398 47.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 5.2e-80 302.4 353 49.3
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 8.9e-80 301.6 402 48.0
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.0e-79 300.4 394 45.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.3e-78 297.7 392 46.2
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.9e-78 295.8 351 49.0
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 8.3e-78 295.0 437 42.8
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 3.5e-76 289.7 397 45.8
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 7.8e-76 288.5 391 45.3
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 7.8e-76 288.5 383 42.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.7e-75 287.3 397 45.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 7.3e-74 282.0 383 46.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.2e-73 281.2 392 45.2
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 8.9e-72 275.0 392 44.4
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 9.6e-58 228.4 340 44.4
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.8e-55 219.2 379 36.9
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 4.9e-54 216.1 331 42.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.6e-52 211.1 382 36.1
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.0e-51 208.4 168 59.5
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.5e-50 204.5 389 35.2
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.0e-48 195.3 382 33.2
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.0e-48 195.3 382 33.2
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.8e-46 189.9 385 34.3
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.1e-45 188.3 385 34.3
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.1e-44 184.1 145 60.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.5e-44 183.3 192 47.9
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.8e-43 181.0 373 34.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.1e-42 178.3 379 33.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.6e-42 176.0 388 31.4
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.1e-41 174.1 355 32.4
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.1e-41 174.1 415 31.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.8e-41 173.7 381 32.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 6.2e-41 172.6 385 31.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.4e-40 171.4 381 33.1
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.8e-40 171.0 111 72.1
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.6e-39 167.2 416 29.6
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.4e-39 166.8 377 31.8
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 7.6e-39 165.6 396 30.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 7.6e-39 165.6 160 50.6
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.0e-38 165.2 161 50.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.0e-38 165.2 387 29.7
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-37 161.0 385 29.4
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.2e-37 159.8 379 29.3
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.1e-37 159.1 385 29.4
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-36 157.9 338 32.2
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-36 157.9 162 45.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.1e-36 157.5 163 49.7
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.3e-35 154.1 378 28.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 3.9e-35 153.3 385 29.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 5.1e-35 152.9 385 29.9
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 5.1e-35 152.9 385 29.9
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 5.1e-35 152.9 385 29.9
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 8.7e-35 152.1 377 28.6
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.5e-34 151.4 389 28.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.5e-34 150.6 375 29.9
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.6e-33 147.9 367 34.3
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.6e-33 147.9 351 30.8
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 3.7e-33 146.7 392 30.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.1e-32 145.2 104 64.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.4e-32 144.1 320 31.6
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.2e-31 141.7 328 31.7
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-31 141.7 304 35.5
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-31 141.4 291 34.0
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.9e-30 137.1 381 28.1
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.4e-30 135.6 381 27.8
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.4e-29 134.8 322 31.4
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.2e-29 133.7 320 30.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 4.2e-29 133.3 162 40.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.6e-25 121.3 382 28.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.8e-25 119.8 320 29.7
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.4e-24 117.5 165 37.0
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.1e-24 116.7 370 26.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 4.5e-23 113.2 319 27.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.5e-21 107.5 144 36.8
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.2e-21 105.9 320 28.1
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.6e-20 103.6 327 27.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.6e-20 103.2 361 26.0
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.9e-20 102.4 122 41.0
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.4e-19 101.7 302 27.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 6.7e-19 99.4 321 24.9
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.7e-19 99.4 349 26.9
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.7e-17 94.7 161 35.4
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-17 94.7 104 44.2
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.8e-17 94.0 321 26.8
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 4.8e-17 93.2 326 25.2
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-16 92.0 118 43.2
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.1e-16 92.0 320 24.4
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-16 92.0 324 25.9
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 9.1e-16 89.0 75 57.3
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.9e-15 86.3 322 25.2
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-14 85.5 321 24.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-14 85.5 321 24.6
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 5.7e-10 69.7 76 52.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 6.3e-09 66.2 100 33.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 8.2e-09 65.9 58 58.6
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.4e-08 64.3 70 48.6
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 3.1e-08 63.9 65 47.7
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 4.1e-08 63.5 75 46.7
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 4.1e-08 63.5 75 46.7
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 5.3e-08 63.2 57 56.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-07 61.6 57 54.4


User provided reference genes

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