Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.3e-218 761.9 376 100.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.0e-170 602.1 379 78.1
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 5.7e-169 597.8 374 78.9
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 9.7e-169 597.0 377 78.5
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.8e-167 592.8 377 77.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.4e-167 592.4 378 78.0
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 5.3e-167 591.3 377 77.5
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.3e-167 591.3 377 77.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 7.0e-167 590.9 378 76.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.2e-166 590.1 377 77.7
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.6e-166 589.7 377 77.2
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.6e-166 589.0 376 77.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.5e-166 588.6 383 77.8
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 3.5e-166 588.6 376 76.9
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.3e-165 586.6 380 77.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.7e-165 586.3 377 76.9
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.7e-165 586.3 383 75.7
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.9e-165 585.5 382 74.9
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 6.5e-165 584.3 383 74.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.9e-164 582.8 374 77.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.5e-164 582.4 378 76.2
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 4.2e-164 581.6 378 75.4
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 5.5e-164 581.3 380 77.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.5e-164 581.3 399 72.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.2e-163 580.1 391 74.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.6e-163 579.7 374 76.7
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.1e-163 579.3 377 77.2
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 4.7e-163 578.2 378 75.9
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 4.7e-163 578.2 378 75.7
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.0e-162 577.0 342 80.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-162 576.2 376 76.6
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 5.2e-162 574.7 378 73.3
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.2e-161 573.5 375 76.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.5e-161 573.2 403 71.5
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.6e-161 572.4 383 74.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 4.4e-161 571.6 379 75.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 7.5e-161 570.9 377 76.1
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.7e-160 569.7 368 77.4
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-159 566.6 376 74.7
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.6e-158 563.1 376 74.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.0e-158 562.8 318 82.1
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 4.5e-158 561.6 376 73.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.5e-158 561.6 394 72.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.0e-157 560.5 374 72.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.0e-157 560.5 375 72.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.0e-157 560.5 376 73.4
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 2.9e-157 558.9 381 71.9
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.5e-157 557.4 375 73.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 8.5e-157 557.4 318 83.3
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.1e-156 557.0 318 82.4
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.5e-156 556.6 373 71.6
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 3.2e-156 555.4 388 70.9
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 3.2e-156 555.4 372 73.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 7.2e-156 554.3 375 72.8
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.6e-155 553.1 309 84.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.6e-155 553.1 378 73.8
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.1e-155 552.7 374 71.9
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.1e-155 552.7 319 81.8
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.4e-154 550.1 375 70.9
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 2.3e-154 549.3 381 70.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.0e-154 548.5 381 70.9
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-154 547.7 375 71.2
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.8e-154 547.4 376 72.6
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.2e-153 547.0 377 71.6
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-153 547.0 377 71.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 376 72.1
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 307 83.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.4e-153 545.4 379 72.6
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.4e-153 545.4 376 72.1
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.4e-153 545.4 376 72.1
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 4.4e-153 545.0 318 79.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 4.4e-153 545.0 377 71.1
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.7e-152 543.1 397 68.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-152 542.3 379 70.4
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.8e-152 542.3 376 71.8
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-152 542.3 376 71.8
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.7e-152 542.0 376 71.8
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.3e-152 541.2 315 79.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 6.3e-152 541.2 385 69.1
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.3e-152 540.8 365 72.3
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-151 540.4 371 71.7
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.4e-151 538.1 377 72.9
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.5e-150 535.4 378 69.0
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.5e-150 535.0 377 69.2
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 7.7e-150 534.3 375 69.6
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.0e-149 533.9 381 69.6
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-149 533.1 374 69.8
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.3e-149 532.7 313 79.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 3.8e-149 531.9 349 77.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.1e-148 530.4 409 66.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.5e-148 529.3 300 81.7
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.2e-148 528.5 376 68.9
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 5.5e-148 528.1 317 78.5
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 5.5e-148 528.1 313 80.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 4.7e-147 525.0 376 68.1
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.0e-146 523.9 315 76.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.4e-146 523.5 342 70.8
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 3.0e-146 522.3 376 67.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 4.0e-146 521.9 376 67.8
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.2e-145 520.4 377 67.6
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.2e-145 520.4 377 69.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.6e-145 519.2 315 76.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 4.4e-145 518.5 315 76.8
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.3e-144 516.9 382 68.8
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.2e-143 512.3 346 76.0
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 5.4e-143 511.5 377 67.4
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 9.2e-143 510.8 375 66.7
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 9.2e-143 510.8 379 66.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 9.2e-143 510.8 377 67.9
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.7e-142 509.2 389 64.5
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 7.8e-142 507.7 315 74.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-139 500.0 315 72.7
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.6e-139 500.0 317 72.6
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 6.1e-139 498.0 379 65.4
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.8e-138 496.5 317 73.5
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 8.9e-138 494.2 346 74.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.4e-137 492.3 315 73.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 6.4e-136 488.0 301 72.4
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 8.3e-136 487.6 362 64.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 3.2e-135 485.7 344 70.9
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-132 477.2 375 63.5
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 2.1e-131 473.0 303 72.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 4.9e-128 461.8 323 70.6
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 6.4e-128 461.5 347 68.9
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.4e-127 459.5 321 70.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.7e-125 453.4 293 69.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 9.5e-124 447.6 257 79.8
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 9.5e-124 447.6 257 79.8
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.2e-123 444.9 377 62.3
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.7e-120 435.6 321 62.9
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 4.9e-120 435.3 241 85.1
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 8.4e-120 434.5 296 63.2
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.9e-116 423.3 323 70.9
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 8.1e-115 417.9 316 62.0
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 4.4e-113 412.1 358 61.2
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 9.3e-111 404.4 333 56.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 9.6e-108 394.4 246 78.0
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.6e-107 392.5 303 58.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.1e-103 380.9 293 60.8
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.1e-103 378.3 309 60.8
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.3e-101 374.0 218 81.2
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.6e-99 365.9 389 51.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.1e-94 350.1 196 83.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-93 347.1 196 84.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 8.1e-91 338.2 233 72.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 6.9e-90 335.1 216 75.9
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.6e-89 333.2 259 62.5
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.3e-75 287.7 196 75.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-74 283.9 327 48.3
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 7.7e-73 278.5 344 43.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-70 270.8 219 63.0
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.1e-68 264.6 300 46.0
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 6.9e-66 255.4 298 46.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 6.9e-66 255.4 304 44.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.2e-51 207.2 153 69.3
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.1e-50 203.4 114 79.8
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 9.4e-47 191.8 181 61.9
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.2e-44 184.9 325 37.5
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 5.7e-36 156.0 94 81.9
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 5.7e-36 156.0 131 64.1
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 9.8e-36 155.2 92 82.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-35 154.1 92 82.6
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 4.9e-35 152.9 131 63.4
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 4.1e-34 149.8 131 61.8
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.6e-33 147.9 94 76.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.8e-30 137.1 97 74.2
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.8e-29 134.4 73 84.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 2.9e-27 127.1 353 29.2
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.2e-25 121.7 66 81.8
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.0e-24 118.6 74 74.3
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-23 115.2 133 51.9
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-23 114.8 66 77.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-22 111.3 92 66.3
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.6e-20 104.0 116 49.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.7e-17 94.0 61 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.9e-15 87.8 245 30.2
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 2.1e-14 84.3 51 74.5
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 3.1e-13 80.5 99 51.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.5e-12 78.2 47 76.6
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 8.3e-11 72.4 41 80.5
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 4.6e-09 66.6 43 67.4
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 6.6e-08 62.8 42 66.7
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 6.6e-08 62.8 42 66.7
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 6.2e-06 56.2 39 61.5
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 6.2e-06 56.2 33 78.8


User provided reference genes

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