Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 2697.2 1379 100.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1601.6 1388 60.9
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1592.4 1379 61.6
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1547.7 1380 59.3
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1545.8 1408 58.9
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1545.0 1338 61.1
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1544.3 1369 59.4
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1541.9 1382 58.9
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1538.1 1382 59.0
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1535.8 1384 58.8
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1530.0 1384 58.5
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1507.7 1375 59.1
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1502.6 1407 57.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1493.4 1365 58.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1491.9 1381 58.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1485.7 1403 57.4
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1479.9 1365 58.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1479.5 1383 56.5
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1468.4 1427 55.4
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1447.2 1374 56.3
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1437.6 1397 55.4
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1436.8 1348 57.8
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1435.2 1388 56.8
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1422.5 1387 55.7
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1421.4 1383 55.4
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1416.7 1380 55.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1413.3 1390 54.8
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1412.9 1394 55.5
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1401.0 1389 54.9
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1394.8 1449 53.1
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1389.0 1388 54.4
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1388.2 1383 55.0
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1385.9 1399 53.8
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1378.6 1388 53.4
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1384 54.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1364.7 1436 52.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1363.6 1226 59.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1360.5 1418 53.3
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1355.9 1374 54.6
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1351.3 1377 53.4
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1350.1 1355 54.4
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1346.6 1388 52.4
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1345.9 1385 54.1
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1345.1 1368 53.9
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1372 54.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1341.3 1369 53.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1338.2 1381 53.9
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1337.0 1391 53.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1336.2 1377 53.4
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1376 53.2
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1328.2 1366 53.1
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1327.8 1380 52.7
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1327.8 1329 56.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1318.1 1403 52.0
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1313.5 1369 52.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1308.9 1372 52.5
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1308.5 1412 51.0
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1307.4 1359 52.8
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1302.7 1369 52.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1300.0 1411 50.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1284.2 1370 52.4
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1273.5 1472 49.9
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1273.1 1376 51.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1270.8 1376 51.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1269.6 1378 51.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1268.8 1378 51.7
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1376 51.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1264.6 1573 47.6
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1260.7 1376 51.4
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1251.5 1373 51.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1250.0 1392 50.4
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1216.1 1381 48.4
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1204.1 1385 50.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1189.5 1607 45.5
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1176.4 1382 48.9
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1173.7 1371 49.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1161.0 1142 56.2
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 9.4e-312 1074.3 1385 45.2
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 2.8e-298 1029.2 990 56.7
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.5e-291 1006.1 1012 56.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.3e-291 1005.7 1068 52.2
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 9.1e-289 997.7 1130 49.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 9.4e-278 961.1 1156 46.8
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.1e-261 905.2 1023 49.6
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 7.5e-243 845.1 1372 38.6
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.9e-242 843.2 848 54.2
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.7e-237 825.9 829 54.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.3e-231 807.7 761 56.1
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.0e-215 755.0 731 55.4
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.2e-208 731.5 818 49.8
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 6.0e-192 676.0 1387 34.9
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 8.7e-183 645.6 1437 32.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.5e-169 600.9 1438 30.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 1.5e-158 565.1 600 53.3
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.5e-153 548.5 456 64.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.0e-151 542.3 526 54.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.3e-146 524.6 458 61.8
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.9e-138 497.7 535 51.6
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.9e-137 495.0 535 51.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.6e-134 484.6 665 40.9
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 9.2e-132 476.1 1016 33.6
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 9.2e-132 476.1 412 61.2
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 7.3e-129 466.5 343 68.8
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.5e-94 350.9 472 39.6
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.2e-86 326.2 577 38.0
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.3e-82 312.0 266 59.4
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.3e-81 308.1 755 32.8
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.3e-79 300.8 471 39.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 5.8e-78 297.4 352 50.0
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.8e-69 268.1 372 43.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.8e-66 259.2 440 37.0
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 4.5e-62 244.6 402 40.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 9.4e-60 236.9 230 55.2
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.1e-59 235.7 163 71.2
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 2.6e-54 218.8 224 55.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.5e-54 218.0 355 38.0
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-53 216.1 149 72.5
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-52 211.8 138 73.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.2e-46 193.4 155 63.9
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.8e-45 188.3 191 55.0
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 6.5e-45 187.6 226 48.2
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 4.7e-43 181.4 198 55.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 6.1e-43 181.0 1180 22.4
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.4e-42 179.9 249 39.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 3.3e-41 175.3 150 61.3
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.7e-40 172.9 707 26.3
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.1e-39 170.2 293 35.2
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.2e-38 166.8 176 55.1
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 5.2e-34 151.4 1182 23.0
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.8e-32 144.8 133 56.4
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.3e-29 136.0 411 28.7
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 3.8e-29 135.2 139 51.8
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.8e-27 129.0 206 42.2
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.6e-25 122.5 96 63.5
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 5.7e-25 121.3 90 67.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.6e-22 113.2 271 33.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.8e-22 110.9 166 41.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.9e-21 109.0 566 24.4
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.8e-21 108.6 76 67.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 4.3e-20 105.1 92 59.8
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.4e-18 100.1 152 39.5
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.3e-18 99.4 108 56.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 2.2e-16 92.8 87 54.0
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 3.7e-16 92.0 61 67.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 4.9e-16 91.7 111 45.9
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.3e-16 90.9 142 45.1
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 7.0e-15 87.8 72 61.1
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 9.2e-15 87.4 100 40.0
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.9e-13 82.0 127 38.6
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 7.3e-12 77.8 58 58.6
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 2.1e-11 76.3 95 40.0
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 4.7e-11 75.1 56 69.6
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 6.8e-10 71.2 143 39.2
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.5e-09 70.1 143 39.2
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.5e-09 67.8 140 32.9
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 8.3e-08 64.3 51 56.9
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.1e-07 63.9 62 56.5
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 1.4e-07 63.5 87 44.8
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.2e-07 62.4 136 32.4
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 9.2e-07 60.8 96 44.8
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.1e-06 59.7 96 43.8
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.7e-06 59.3 150 31.3


User provided reference genes

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