Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 0.0e+00 1502.6 783 100.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1080.1 912 63.2
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1079.3 911 63.6
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1078.9 914 63.3
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1078.2 850 66.5
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 5.4e-312 1073.9 913 63.1
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 3.1e-310 1068.1 912 63.3
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 9.0e-310 1066.6 910 62.0
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 3.4e-309 1064.7 914 62.9
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.8e-309 1063.9 912 61.8
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 7.6e-309 1063.5 910 63.1
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 1.0e-308 1063.1 910 61.8
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 6.5e-308 1060.4 912 61.6
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 8.4e-308 1060.1 912 61.5
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 1.9e-307 1058.9 909 62.0
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 2.5e-307 1058.5 915 62.4
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 7.2e-307 1057.0 916 61.9
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 3.5e-306 1054.7 911 61.8
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 3.0e-305 1051.6 914 62.0
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 3.0e-305 1051.6 911 62.1
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 6.7e-305 1050.4 912 62.5
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 8.7e-305 1050.0 912 61.1
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 1.1e-304 1049.7 911 61.7
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 5.7e-304 1047.3 912 60.9
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 7.4e-304 1047.0 916 61.2
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 1.6e-303 1045.8 911 61.8
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 2.2e-303 1045.4 914 62.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 8.2e-303 1043.5 912 60.7
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 2.4e-302 1042.0 911 61.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 3.1e-302 1041.6 912 60.7
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 5.3e-302 1040.8 912 61.7
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 2.0e-301 1038.9 911 61.8
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 1.3e-300 1036.2 915 60.1
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 2.9e-300 1035.0 911 60.2
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 5.0e-300 1034.2 912 61.7
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 6.5e-300 1033.9 905 60.9
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 3.2e-299 1031.6 912 60.7
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 4.2e-299 1031.2 912 60.2
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 1.8e-297 1025.8 908 60.1
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 2.3e-297 1025.4 912 60.6
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 6.7e-297 1023.8 914 60.0
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 3.3e-296 1021.5 914 59.8
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 5.7e-296 1020.8 911 59.6
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 9.7e-296 1020.0 911 60.8
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 9.7e-296 1020.0 915 60.5
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 1.3e-295 1019.6 916 60.5
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 1.3e-295 1019.6 912 60.4
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 1.1e-294 1016.5 906 59.9
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 1.1e-294 1016.5 898 60.8
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 2.4e-294 1015.4 911 60.0
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 3.1e-294 1015.0 907 60.1
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 4.1e-294 1014.6 909 59.1
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 1.5e-293 1012.7 914 60.4
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 5.9e-293 1010.7 914 59.8
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 5.9e-293 1010.7 915 60.3
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 1.3e-292 1009.6 911 58.9
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 1.7e-292 1009.2 913 60.0
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 2.9e-292 1008.4 915 60.2
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.0e-292 1007.7 912 59.3
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 6.5e-292 1007.3 913 60.0
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 8.5e-292 1006.9 912 59.5
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 1.1e-291 1006.5 911 58.9
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 1.1e-291 1006.5 912 59.2
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 4.2e-291 1004.6 911 59.7
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 4.2e-291 1004.6 914 59.3
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 5.5e-291 1004.2 916 59.4
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 1.2e-290 1003.0 926 59.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 1.2e-290 1003.0 1001 55.3
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 1.6e-290 1002.7 911 58.2
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 2.1e-290 1002.3 911 58.5
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 4.7e-290 1001.1 911 59.6
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 6.1e-290 1000.7 912 59.1
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 1.4e-289 999.6 908 58.6
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 1.4e-289 999.6 909 59.7
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 5.1e-289 997.7 926 58.9
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 5.1e-289 997.7 908 58.4
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 8.8e-289 996.9 912 58.9
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 9.7e-288 993.4 908 58.5
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 1.7e-287 992.6 914 60.0
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 2.8e-287 991.9 911 58.1
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 8.2e-287 990.3 913 58.8
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 3.1e-286 988.4 911 58.1
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 6.5e-284 980.7 860 60.8
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 1.5e-283 979.5 827 63.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 1.2e-282 976.5 916 57.3
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 1.8e-281 972.6 914 58.0
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 1.8e-281 972.6 914 58.0
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 5.2e-281 971.1 911 58.3
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 1.7e-279 966.1 908 57.4
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.4e-278 962.2 846 61.0
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 4.1e-278 961.4 912 56.9
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 9.1e-278 960.3 910 56.4
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 1.2e-277 959.9 908 57.8
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 2.7e-277 958.7 913 56.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 5.9e-277 957.6 913 57.0
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 2.9e-276 955.3 914 56.7
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 2.9e-276 955.3 914 56.7
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 1.2e-272 943.3 943 54.6
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 2.9e-268 928.7 915 56.5
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 7.7e-261 904.0 911 55.5
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 3.8e-260 901.7 922 53.1
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 3.5e-253 878.6 909 53.8
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.9e-238 829.7 912 49.1
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 2.0e-224 783.1 916 50.4
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 6.2e-210 734.9 803 48.8
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 5.5e-206 721.8 919 42.5
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 3.1e-201 706.1 924 41.3
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 9.6e-195 684.5 894 40.8
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.4e-193 680.6 913 42.5
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 6.9e-193 678.3 913 42.1
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.0e-191 672.2 607 59.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.4e-190 670.6 913 42.8
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.4e-190 670.6 916 42.2
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 6.1e-189 665.2 644 57.8
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 5.1e-180 635.6 713 50.1
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.8e-178 629.8 534 62.4
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.8e-178 629.8 534 62.4
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.8e-153 547.4 1005 33.5
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.9e-152 542.3 661 46.3
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 2.0e-139 500.7 838 35.6
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 8.0e-133 478.8 427 60.0
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 6.2e-101 372.9 354 57.3
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.6e-93 348.2 985 27.9
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.0e-84 317.0 264 61.4
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.0e-84 317.0 264 61.4
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.8e-79 301.6 264 61.0
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.8e-63 248.4 971 26.3
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 9.1e-60 236.1 226 56.6
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.6e-54 218.0 237 48.1
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.4e-28 132.5 122 61.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.9e-25 122.1 91 60.4
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 4.4e-22 110.9 429 24.2
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.2e-16 92.8 79 54.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.2e-15 87.4 53 81.1
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.1e-12 79.7 119 36.1
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 9.2e-12 76.6 120 35.0


User provided reference genes

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