Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 0.0e+00 1143.6 634 100.0
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 2.6e-243 845.5 638 75.1
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 5.9e-243 844.3 637 70.3
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 5.9e-243 844.3 638 73.4
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 7.7e-243 844.0 637 72.2
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 8.5e-242 840.5 644 71.6
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.5e-241 839.7 637 69.7
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 1.9e-241 839.3 637 72.7
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 2.0e-238 829.3 639 73.1
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.6e-238 828.9 636 67.6
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 2.8e-237 825.5 637 68.4
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 4.8e-237 824.7 637 68.1
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.4e-236 823.2 637 69.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.8e-236 822.8 649 68.1
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.0e-236 820.8 639 70.3
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 4.5e-235 818.1 641 68.5
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 5.9e-235 817.8 637 69.1
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 7.7e-235 817.4 638 67.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.3e-234 816.6 637 67.8
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.7e-234 816.2 644 67.9
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.7e-234 816.2 639 70.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.9e-233 812.8 657 67.0
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.5e-233 812.4 637 67.2
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 9.4e-233 810.4 638 68.0
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.6e-232 809.7 635 69.6
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.8e-231 806.2 639 69.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.8e-231 804.3 635 67.6
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.2e-230 803.5 639 67.6
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.0e-230 802.7 638 69.9
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 3.4e-230 802.0 650 67.8
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 3.4e-230 802.0 637 69.4
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 9.8e-230 800.4 639 66.8
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.2e-229 799.3 658 66.0
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 2.8e-229 798.9 642 66.7
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 2.8e-229 798.9 642 66.7
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 2.8e-229 798.9 638 67.2
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.7e-229 798.5 635 67.4
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 3.7e-229 798.5 637 67.2
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 6.3e-229 797.7 638 67.1
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.4e-228 795.8 639 66.7
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.6e-227 793.1 639 66.7
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.6e-226 787.7 659 66.9
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.0e-224 780.8 639 66.8
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 5.2e-223 778.1 633 66.8
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.2e-223 778.1 642 66.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 5.7e-222 774.6 637 65.1
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 6.3e-221 771.2 636 65.7
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.1e-220 770.4 633 66.4
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.4e-220 770.0 643 64.4
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 2.4e-220 769.2 509 76.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.2e-219 766.9 647 64.6
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.7e-219 765.8 785 58.1
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 3.5e-219 765.4 631 65.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.5e-219 765.0 647 63.8
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.9e-218 762.3 645 63.7
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.9e-217 759.6 645 64.0
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.3e-217 758.4 638 64.1
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 7.3e-217 757.7 570 68.6
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.2e-216 756.9 642 64.6
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 3.6e-216 755.4 642 65.1
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.2e-215 751.5 636 65.9
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 6.8e-215 751.1 640 63.1
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 2.0e-214 749.6 658 62.8
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.4e-214 748.4 637 62.2
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.7e-213 746.5 652 63.3
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.2e-213 746.1 639 62.0
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 6.4e-213 744.6 636 62.6
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.4e-212 743.4 642 64.3
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.4e-212 741.5 639 62.6
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.6e-211 740.0 532 71.4
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.5e-211 738.8 637 61.2
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.5e-211 738.8 532 70.5
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.0e-210 737.3 644 66.0
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.0e-210 737.3 639 62.6
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 1.7e-210 736.5 653 62.2
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.9e-210 735.3 648 61.0
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 7.3e-209 731.1 644 62.4
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.1e-208 729.6 639 63.2
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 6.2e-208 728.0 638 62.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.1e-207 727.2 641 61.3
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.1e-207 727.2 639 60.6
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.1e-207 727.2 644 64.8
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.4e-207 726.9 651 60.5
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.4e-207 726.9 649 64.7
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.5e-206 723.4 642 61.8
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 4.4e-206 721.8 653 59.9
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.3e-205 720.3 639 60.7
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 2.2e-205 719.5 654 61.6
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 8.3e-205 717.6 651 60.1
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 5.4e-204 714.9 635 60.9
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 2.7e-203 712.6 641 62.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.7e-203 712.6 638 62.1
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.7e-202 709.9 520 71.0
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 2.3e-202 709.5 636 60.2
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 8.6e-202 707.6 636 60.1
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.5e-201 706.8 489 74.8
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.8e-200 702.6 635 60.2
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.8e-200 702.6 635 60.2
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.6e-200 702.2 639 61.3
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.7e-200 701.8 641 60.1
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.2e-198 697.2 512 71.5
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 8.6e-194 681.0 661 59.0
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 7.3e-193 677.9 642 57.5
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 3.8e-189 665.6 643 58.3
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 3.2e-188 662.5 654 59.9
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.7e-187 659.4 457 73.1
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.3e-184 650.6 638 57.1
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.5e-182 643.7 431 75.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.9e-180 636.7 638 55.5
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 5.4e-180 635.2 644 55.6
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.9e-177 626.7 397 78.3
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 4.0e-175 619.0 502 63.5
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.9e-173 612.1 688 52.2
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.6e-168 597.0 461 66.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.3e-165 587.4 653 53.0
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 1.4e-164 583.9 453 66.7
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.2e-164 582.8 649 53.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.7e-163 579.7 566 56.5
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 6.5e-157 558.5 660 48.0
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 9.3e-156 554.7 633 49.3
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.0e-154 551.2 362 75.7
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.0e-149 534.6 315 83.5
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 8.8e-146 521.5 637 48.4
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.5e-145 520.0 654 46.2
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.3e-145 519.6 641 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.8e-144 516.5 682 44.7
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 7.7e-142 508.4 300 82.3
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.8e-136 490.0 313 77.6
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 4.7e-131 472.6 313 73.5
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.8e-125 453.0 560 48.4
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 8.5e-125 451.8 300 73.0
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.0e-106 391.7 308 68.8
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.6e-102 377.9 257 71.2
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.6e-102 377.9 257 71.2
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.3e-67 261.9 228 63.2
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.7e-56 224.9 426 35.2
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.6e-38 165.2 156 58.3
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 3.8e-32 144.1 193 47.2
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 4.2e-31 140.6 321 34.0
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.6e-30 138.7 185 47.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.7e-27 128.6 355 31.8
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 3.1e-26 124.4 87 69.0
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 8.5e-24 116.3 92 70.7
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 7.9e-22 109.8 192 38.0
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.3e-16 92.4 180 44.4
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 5.3e-10 70.5 161 48.4
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 6.5e-08 63.5 161 33.5
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 1.1e-07 62.8 67 49.3
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 1.9e-07 62.0 160 48.8
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 9.4e-07 59.7 157 31.8
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-06 58.9 41 65.9


User provided reference genes

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