Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 9.7e-83 310.1 154 100.0
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 2.8e-21 105.9 136 44.1
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 3.6e-21 105.5 154 46.1
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 3.1e-20 102.4 148 41.9
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 4.0e-20 102.1 145 43.4
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 7.6e-19 97.8 149 41.6
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 7.6e-19 97.8 149 41.6
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 7.6e-19 97.8 149 41.6
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 4.9e-18 95.1 153 40.5
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 4.9e-18 95.1 134 40.3
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 6.4e-18 94.7 139 44.6
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 8.4e-18 94.4 162 38.9
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 8.4e-18 94.4 152 40.8
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 4.2e-17 92.0 154 40.9
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.2e-16 90.5 144 41.0
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 1.2e-16 90.5 157 39.5
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 2.7e-16 89.4 153 39.2
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 3.5e-16 89.0 160 36.9
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 1.0e-15 87.4 154 41.6
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 1.3e-15 87.0 156 40.4
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.3e-15 87.0 147 38.1
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 1.7e-15 86.7 158 39.9
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 3.0e-15 85.9 140 40.0
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 6.6e-15 84.7 155 35.5
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 6.6e-15 84.7 135 41.5
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 8.7e-15 84.3 158 36.7
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 1.5e-14 83.6 174 35.1
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.9e-14 83.2 141 37.6
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 5.6e-14 81.6 169 36.7
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.6e-13 79.0 148 37.2
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 6.2e-13 78.2 144 36.8
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 8.1e-13 77.8 169 35.5
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 1.4e-12 77.0 142 33.1
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 5.3e-12 75.1 142 32.4
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 6.9e-12 74.7 102 45.1
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 9.0e-12 74.3 151 37.1
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 9.0e-12 74.3 168 36.9
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 2.6e-11 72.8 144 35.4
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 4.5e-11 72.0 175 32.6
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 5.8e-11 71.6 152 38.2
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 5.8e-11 71.6 169 37.9
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 7.6e-11 71.2 161 33.5
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 9.9e-11 70.9 169 36.7
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 1.7e-10 70.1 160 33.8
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 2.2e-10 69.7 146 34.9
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 2.9e-10 69.3 177 35.0
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 2.9e-10 69.3 97 37.1
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 3.8e-10 68.9 112 35.7
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 3.8e-10 68.9 173 31.2
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 6.4e-10 68.2 161 31.7
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 6.4e-10 68.2 155 32.9
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 1.1e-09 67.4 151 36.4
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.4e-09 67.0 178 36.5
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 1.4e-09 67.0 85 41.2
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 1.4e-09 67.0 171 33.3
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.9e-09 66.6 151 34.4
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.9e-09 66.6 127 34.6
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 2.4e-09 66.2 170 31.8
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 4.2e-09 65.5 92 40.2
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 7.1e-09 64.7 137 35.0
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 9.3e-09 64.3 88 39.8
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 1.6e-08 63.5 149 31.5
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.7e-08 62.8 170 35.3
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 3.5e-08 62.4 161 32.3
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 7.9e-08 61.2 118 34.7
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 7.9e-08 61.2 178 28.1
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.8e-07 60.1 120 34.2
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 2.3e-07 59.7 179 28.5
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 2.3e-07 59.7 56 42.9
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 5.1e-07 58.5 46 54.3
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 5.1e-07 58.5 113 34.5
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 6.7e-07 58.2 69 43.5
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 8.7e-07 57.8 199 27.6
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 1.1e-06 57.4 154 31.8
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.1e-06 57.4 119 32.8
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 1.5e-06 57.0 161 30.4
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 3.3e-06 55.8 118 32.2
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 55.8 184 26.1
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 3.3e-06 55.8 178 29.2
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 3.3e-06 55.8 155 31.6
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 5.6e-06 55.1 49 49.0
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 7.4e-06 54.7 123 30.1


User provided reference genes

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