Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.4e-116 423.3 277 100.0
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 4.5e-46 189.1 181 65.2
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 8.2e-40 168.3 137 66.4
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 8.5e-29 131.7 177 44.6
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 8.0e-27 125.2 182 40.7
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 6.8e-26 122.1 182 46.2
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 1.3e-24 117.9 197 46.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 4.8e-24 115.9 134 47.8
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 6.3e-24 115.5 133 46.6
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 8.3e-24 115.2 136 47.8
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 8.3e-24 115.2 133 48.1
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 1.8e-23 114.0 142 49.3
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 2.4e-23 113.6 142 48.6
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 2.4e-23 113.6 139 47.5
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 7.0e-23 112.1 137 46.0
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 9.1e-23 111.7 126 50.8
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 1.2e-22 111.3 137 48.2
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 2.0e-22 110.5 137 47.4
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 2.7e-22 110.2 134 45.5
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 3.5e-22 109.8 135 44.4
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 7.7e-22 108.6 137 45.3
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 1.7e-21 107.5 134 44.8
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 1.7e-21 107.5 130 47.7
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 3.8e-21 106.3 186 44.1
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 3.8e-21 106.3 141 45.4
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 6.5e-21 105.5 142 47.2
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 8.5e-21 105.1 142 47.2
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.5e-20 104.4 137 44.5
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.5e-20 104.4 137 44.5
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 1.5e-20 104.4 136 44.9
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 2.5e-20 103.6 135 43.0
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 2.5e-20 103.6 122 46.7
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 4.2e-20 102.8 135 43.0
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 4.2e-20 102.8 133 46.6
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.2e-20 102.8 128 43.8
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 4.2e-20 102.8 137 43.1
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 7.2e-20 102.1 137 44.5
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 9.5e-20 101.7 131 44.3
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 9.5e-20 101.7 136 46.3
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.2e-19 101.3 141 44.7
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.2e-19 101.3 134 44.0
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 1.2e-19 101.3 134 44.0
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 1.2e-19 101.3 135 45.9
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.2e-19 101.3 119 46.2
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 1.6e-19 100.9 186 43.5
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 1.6e-19 100.9 137 46.7
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 1.6e-19 100.9 119 47.9
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 2.1e-19 100.5 137 45.3
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 2.1e-19 100.5 137 45.3
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 2.8e-19 100.1 122 47.5
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 2.8e-19 100.1 121 45.5
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 3.6e-19 99.8 132 46.2
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 6.1e-19 99.0 128 43.8
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 8.0e-19 98.6 124 44.4
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 1.0e-18 98.2 129 45.7
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 1.0e-18 98.2 132 46.2
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 1.4e-18 97.8 185 36.2
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.4e-18 97.8 119 44.5
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.4e-18 97.8 134 41.8
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.8e-18 97.4 123 46.3
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.8e-18 97.4 123 46.3
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.8e-18 97.4 123 46.3
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 1.8e-18 97.4 139 43.9
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 2.3e-18 97.1 185 35.7
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 2.3e-18 97.1 123 46.3
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 2.3e-18 97.1 139 42.4
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 2.3e-18 97.1 174 39.1
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 2.3e-18 97.1 135 43.0
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 3.0e-18 96.7 186 35.5
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 3.0e-18 96.7 135 41.5
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 3.0e-18 96.7 135 45.9
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 3.0e-18 96.7 186 45.2
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 3.0e-18 96.7 135 44.4
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 3.0e-18 96.7 137 41.6
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 4.0e-18 96.3 137 43.8
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 4.0e-18 96.3 135 42.2
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 5.2e-18 95.9 123 45.5
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 5.2e-18 95.9 128 46.1
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 8.8e-18 95.1 185 36.2
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 8.8e-18 95.1 117 45.3
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 8.8e-18 95.1 128 41.4
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 8.8e-18 95.1 128 41.4
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 1.2e-17 94.7 141 42.6
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 1.5e-17 94.4 186 43.0
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 2.0e-17 94.0 132 43.9
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 3.4e-17 93.2 185 38.4
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 3.4e-17 93.2 141 42.6
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.4e-17 93.2 124 43.5
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 3.4e-17 93.2 124 43.5
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 7.5e-17 92.0 135 41.5
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 7.5e-17 92.0 133 41.4
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 9.8e-17 91.7 115 46.1
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 1.7e-16 90.9 141 41.1
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 2.2e-16 90.5 185 34.6
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 2.2e-16 90.5 165 35.2
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 2.8e-16 90.1 136 41.2
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 3.7e-16 89.7 130 42.3
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 3.7e-16 89.7 119 42.9
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 6.3e-16 89.0 140 42.1
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 6.3e-16 89.0 134 41.0
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 8.3e-16 88.6 123 42.3
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 1.4e-15 87.8 125 43.2
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.4e-15 87.8 119 42.0
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 1.8e-15 87.4 119 43.7
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 3.1e-15 86.7 128 45.3
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 3.1e-15 86.7 125 41.6
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 4.1e-15 86.3 131 42.7
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 5.4e-15 85.9 131 44.3
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 9.2e-15 85.1 138 40.6
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 9.2e-15 85.1 142 37.3
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 3.5e-14 83.2 137 39.4
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 5.9e-14 82.4 122 45.9
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 7.7e-14 82.0 116 40.5
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 1.0e-13 81.6 117 41.0
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 1.7e-13 80.9 141 40.4
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 2.9e-13 80.1 120 42.5
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 6.6e-13 79.0 119 39.5
Zm00001eb408490 Zea mays HOM05D000029 ORTHO05D003879 6.6e-13 79.0 177 29.4
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 8.6e-13 78.6 132 37.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 1.1e-12 78.2 141 38.3
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 1.1e-12 78.2 139 36.7
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 3.3e-12 76.6 116 37.9
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 3.3e-12 76.6 135 36.3
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 5.6e-12 75.9 139 38.1
VMungo0464G0087 Vigna mungo HOM05D000029 ORTHO05D003879 5.6e-12 75.9 134 36.6
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 9.5e-12 75.1 120 38.3
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 9.5e-12 75.1 120 38.3
Nn5g27753 Nelumbo nucifera HOM05D000029 ORTHO05D003879 1.6e-11 74.3 116 39.7
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 2.8e-11 73.6 122 39.3
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 4.7e-11 72.8 113 38.9
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 8.0e-11 72.0 127 36.2
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.8e-10 70.9 120 38.3
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 4.0e-10 69.7 118 36.4
CiPaw.07G040300 Carya illinoinensis HOM05D000029 ORTHO05D001395 5.2e-10 69.3 120 38.3
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 3.4e-09 66.6 91 42.9
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 1.7e-08 64.3 132 37.1
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 4.9e-08 62.8 134 33.6
AUR62023560 Chenopodium quinoa HOM05D000029 ORTHO05D006810 8.3e-08 62.0 136 36.8
CARHR033850 Cardamine hirsuta HOM05D000029 ORTHO05D003879 1.4e-07 61.2 72 47.2
SGA_v2.0_scaffold269G46247 Striga asiatica HOM05D000029 ORTHO05D001395 1.8e-07 60.8 124 34.7
DCAR_014393 Daucus carota HOM05D000029 ORTHO05D006810 5.4e-07 59.3 128 34.4
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 5.4e-07 59.3 90 43.3
SEGI_14389 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 1.6e-06 57.8 144 29.2
COL.COLO4_24634 Corchorus olitorius HOM05D000029 ORTHO05D006810 2.0e-06 57.4 125 32.0
CsaV3_5G034500 Cucumis sativus L. HOM05D000033 ORTHO05D004067 2.0e-06 57.4 114 35.1
SEGI_36696 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 2.0e-06 57.4 144 29.9
Thecc.02G329900 Theobroma cacao HOM05D000094 ORTHO05D002350 2.0e-06 57.4 119 39.5
SMO281G0004 Selaginella moellendorffii HOM05D010048 ORTHO05D012120 3.5e-06 56.6 153 31.4
TWI53G1007 Tripterygium wilfordii HOM05D051232 ORTHO05D051480 3.5e-06 56.6 46 58.7
Atru.chr13.2328 Acer truncatum HOM05D000029 ORTHO05D006810 4.6e-06 56.2 137 35.8
Manes.18G107100 Manihot esculenta HOM05D000029 ORTHO05D006810 7.8e-06 55.5 127 33.1


User provided reference genes

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