Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 0.0e+00 1646.3 850 100.0
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 4.6e-275 951.4 1012 53.9
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 7.3e-273 944.1 1009 53.9
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 1.6e-272 943.0 1008 53.9
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 3.3e-265 918.7 990 53.5
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 4.3e-265 918.3 1011 52.9
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 6.2e-264 914.4 1013 52.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 6.9e-263 911.0 1011 51.9
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 1.5e-262 909.8 870 58.7
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 4.9e-261 904.8 1003 52.7
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 2.1e-259 899.4 1001 52.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 4.3e-257 891.7 1011 51.3
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 7.4e-257 891.0 1014 51.0
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 9.6e-257 890.6 1007 51.8
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 1.8e-255 886.3 1008 51.9
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 4.0e-255 885.2 1010 51.5
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 3.4e-254 882.1 1005 51.1
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 7.6e-254 880.9 1002 51.4
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 4.9e-253 878.2 1009 51.5
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 1.6e-251 873.2 1012 50.3
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.5e-251 872.1 1006 52.1
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 6.0e-251 871.3 1011 50.6
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 5.1e-250 868.2 1011 51.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 6.7e-250 867.8 1019 50.9
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 8.7e-250 867.5 1011 51.0
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 1.9e-249 866.3 1008 51.4
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 1.1e-247 860.5 1010 51.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 3.1e-247 859.0 1016 49.9
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 6.9e-247 857.8 1005 50.8
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 2.0e-246 856.3 1014 50.1
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 2.6e-246 855.9 1014 49.7
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 3.4e-246 855.5 1010 50.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 5.9e-246 854.7 948 52.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 3.2e-244 849.0 1017 49.6
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 3.2e-244 849.0 1017 49.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 2.8e-240 835.9 1005 50.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 6.3e-240 834.7 1006 49.2
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 2.1e-235 819.7 1010 48.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 3.6e-235 818.9 1089 47.1
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 8.8e-234 814.3 1012 49.6
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 4.8e-232 808.5 1015 49.1
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 4.1e-231 805.4 994 50.1
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 9.1e-231 804.3 1010 48.2
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 9.1e-231 804.3 1011 48.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.6e-230 802.7 1010 48.1
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 3.4e-230 802.4 1004 48.9
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.9e-230 801.6 1031 48.9
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.3e-229 800.4 1012 49.6
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 1.2e-227 793.9 1009 48.5
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 6.1e-227 791.6 1003 49.7
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 1.0e-226 790.8 1008 47.7
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 1.8e-226 790.0 1009 48.2
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 1.8e-226 790.0 999 48.0
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 1.1e-225 787.3 1003 49.3
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 1.4e-223 780.4 1007 47.8
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 1.8e-223 780.0 1000 48.2
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 2.4e-223 779.6 983 49.2
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 5.3e-223 778.5 1013 46.9
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 5.3e-223 778.5 1015 48.1
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 1.6e-222 776.9 995 47.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 3.5e-222 775.8 1005 48.7
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 3.8e-221 772.3 1007 47.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 5.0e-221 771.9 1008 47.0
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 1.1e-220 770.8 1016 47.1
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 4.7e-219 765.4 996 46.4
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 6.7e-218 761.5 1006 47.1
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 1.3e-216 757.3 987 46.8
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 1.1e-215 754.2 999 46.4
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.2e-214 750.7 771 55.8
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 8.5e-213 744.6 996 46.8
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 4.2e-212 742.3 796 54.8
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 7.2e-212 741.5 1007 45.2
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 6.3e-208 728.4 972 47.1
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 5.4e-207 725.3 908 48.7
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 3.4e-201 706.1 1003 45.0
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 7.0e-199 698.4 1004 44.9
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 1.6e-198 697.2 1000 44.9
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 1.3e-197 694.1 973 45.0
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 6.6e-197 691.8 993 45.1
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 8.6e-197 691.4 995 45.2
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 4.7e-195 685.6 991 45.4
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 1.3e-192 677.6 994 44.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 3.7e-192 676.0 997 44.4
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 1.5e-188 664.1 996 43.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 1.5e-188 664.1 996 43.0
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 5.6e-188 662.1 994 43.0
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 1.2e-187 661.0 997 43.1
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 2.1e-187 660.2 990 43.1
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 2.8e-187 659.8 990 43.1
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 8.9e-186 654.8 989 41.9
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 3.4e-185 652.9 989 42.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 2.2e-184 650.2 965 44.2
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 6.2e-179 632.1 954 44.0
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 1.5e-177 627.5 855 46.1
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 2.0e-177 627.1 966 43.0
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 7.8e-174 615.1 1016 39.4
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-172 611.3 983 41.8
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 8.2e-139 498.8 587 51.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.3e-125 454.1 1034 33.9
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.5e-121 441.4 1040 33.5
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.5e-121 441.4 1040 33.5
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 7.2e-119 432.6 538 49.1
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.3e-112 411.8 497 49.9
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.8e-112 410.2 1057 31.8
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.6e-110 404.8 356 61.8
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.0e-81 308.1 890 30.7
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 9.8e-76 289.3 397 45.1
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 3.7e-75 287.3 315 52.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.6e-73 282.0 588 36.9
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 3.4e-68 264.2 885 30.8
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 2.9e-59 234.6 249 51.0
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 1.1e-58 232.6 432 37.3
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.3e-56 225.7 212 58.0
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 4.4e-52 210.7 853 27.5
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.3e-35 156.0 293 36.9
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 6.7e-32 143.7 70 91.4
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 4.3e-31 141.0 70 90.0
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.3e-24 119.4 63 85.7
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.2e-17 96.3 65 66.2
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 5.7e-15 87.4 92 50.0
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-10 73.2 49 69.4


User provided reference genes

Program Settings