Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 8.4e-199 696.8 352 100.0
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.4e-148 530.0 311 83.6
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.2e-147 526.9 312 83.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.7e-146 523.1 312 83.7
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.2e-146 522.7 316 82.9
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.7e-146 521.9 310 83.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 4.9e-146 521.5 305 84.9
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 4.9e-146 521.5 321 81.6
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 6.4e-146 521.2 320 82.5
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.3e-146 520.8 321 81.9
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 2.4e-145 519.2 306 85.0
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 3.2e-145 518.8 344 77.9
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 5.4e-145 518.1 324 81.8
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 7.0e-145 517.7 309 82.5
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 7.0e-145 517.7 310 82.3
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 7.0e-145 517.7 318 81.8
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 9.2e-145 517.3 307 82.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 9.2e-145 517.3 315 82.2
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.6e-144 516.5 340 78.2
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 2.7e-144 515.8 312 81.4
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 3.5e-144 515.4 312 81.7
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.3e-143 513.5 312 81.7
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.3e-143 512.7 335 78.5
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 5.0e-143 511.5 306 81.7
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 8.6e-143 510.8 313 78.9
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.5e-142 510.0 319 78.1
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.5e-142 509.2 313 78.6
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 4.3e-142 508.4 310 81.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 9.5e-142 507.3 311 81.7
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.2e-141 506.9 312 80.8
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.6e-141 506.5 330 76.7
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 2.1e-141 506.1 348 75.6
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.1e-141 506.1 319 76.8
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 2.8e-141 505.8 327 78.6
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 3.6e-141 505.4 319 76.8
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.7e-141 505.0 319 80.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 8.0e-141 504.2 336 76.2
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 3.1e-140 502.3 323 78.6
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.0e-140 501.9 327 78.3
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 4.0e-140 501.9 308 78.6
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 5.2e-140 501.5 371 72.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 6.8e-140 501.1 308 78.2
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 8.9e-140 500.7 305 81.0
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 5.8e-139 498.0 322 78.9
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 7.5e-139 497.7 327 77.4
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.3e-138 496.9 327 77.4
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 2.2e-138 496.1 311 79.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 2.2e-138 496.1 322 78.6
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.2e-138 496.1 308 79.2
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.9e-138 495.7 320 77.5
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.9e-138 495.7 329 75.4
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 6.4e-138 494.6 310 78.1
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 8.3e-138 494.2 299 82.6
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.4e-137 493.4 323 78.3
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-137 493.4 317 79.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.4e-137 493.4 328 76.8
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 3.2e-137 492.3 324 77.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 5.4e-137 491.5 334 74.9
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.0e-136 489.6 317 77.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 3.5e-136 488.8 339 73.2
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 3.5e-136 488.8 288 83.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 6.0e-136 488.0 320 76.6
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.3e-135 486.9 309 79.9
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 3.9e-135 485.3 330 74.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 3.9e-135 485.3 329 73.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 6.6e-135 484.6 302 79.5
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 8.6e-135 484.2 335 75.5
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.5e-134 483.4 305 79.3
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.5e-134 482.6 309 77.7
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 4.0e-132 475.3 322 76.7
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 2.0e-131 473.0 332 73.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 3.4e-131 472.2 345 73.3
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 3.4e-131 472.2 354 68.9
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 3.4e-131 472.2 354 68.9
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 5.8e-131 471.5 331 73.1
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.2e-130 469.5 323 74.9
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.4e-129 466.8 318 73.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 4.6e-128 461.8 349 71.1
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 7.8e-128 461.1 308 73.7
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 3.3e-126 455.7 320 72.5
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 7.3e-126 454.5 327 72.2
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 9.5e-126 454.1 267 83.9
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.8e-124 449.9 370 66.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.7e-122 442.2 279 79.9
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.1e-117 426.4 281 75.1
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 8.9e-116 421.0 306 71.2
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 9.9e-115 417.5 276 75.7
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.9e-113 413.3 278 72.3
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 7.8e-112 407.9 339 60.5
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 9.6e-110 401.0 302 65.6
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 4.9e-106 388.7 270 74.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 6.0e-104 381.7 241 77.6
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 6.6e-103 378.3 253 76.3
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 6.6e-103 378.3 303 60.7
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 7.4e-102 374.8 268 71.6
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.3e-98 364.0 266 72.2
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 5.5e-97 358.6 260 68.8
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 5.5e-97 358.6 307 59.0
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.7e-96 356.3 232 76.3
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.8e-92 343.6 205 83.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.4e-91 339.3 263 67.7
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 4.9e-90 335.5 201 81.1
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.1e-89 334.3 271 65.3
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.3e-87 327.4 321 59.2
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.1e-84 316.2 196 82.1
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 5.9e-83 312.0 307 56.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.3e-82 310.8 200 76.5
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.7e-82 310.5 346 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.6e-75 286.6 218 65.1
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.2e-65 252.7 148 82.4
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.2e-59 234.6 287 47.7
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 7.7e-59 231.9 132 85.6
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 4.4e-54 216.1 249 51.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 5.7e-54 215.7 152 71.1
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 3.5e-51 206.5 119 87.4
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 6.5e-50 202.2 161 64.6
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 9.4e-49 198.4 120 80.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.2e-48 198.0 120 79.2
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.8e-47 194.1 138 70.3
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 5.2e-47 192.6 130 77.7
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 5.2e-47 192.6 130 77.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 4.8e-45 186.0 331 36.0
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.1e-44 183.3 198 53.5
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 5.4e-44 182.6 126 75.4
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.8e-39 167.5 157 64.3
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.8e-39 165.6 162 59.9
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.5e-33 147.1 87 83.9
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 6.6e-26 122.5 72 79.2
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.9e-21 107.1 99 56.6
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 8.3e-21 105.5 112 55.4
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 3.2e-20 103.6 54 87.0
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.2e-15 86.3 140 39.3
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.2e-14 85.1 53 77.4
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 4.4e-14 83.2 81 54.3
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.3e-13 81.6 110 42.7
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 4.9e-13 79.7 57 66.7
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 4.9e-13 79.7 67 65.7
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 3.2e-12 77.0 55 72.7
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 7.1e-12 75.9 60 66.7
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 8.6e-10 68.9 140 34.3
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 8.1e-08 62.4 36 75.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 3.1e-07 60.5 42 73.8
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 3.1e-07 60.5 54 57.4


User provided reference genes

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