Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.0e-257 892.9 454 100.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.8e-193 679.5 453 75.3
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.7e-191 672.9 461 74.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 3.8e-191 671.8 455 74.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 4.3e-187 658.3 461 74.4
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 7.3e-187 657.5 461 71.6
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 9.6e-187 657.1 456 73.0
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.0e-184 649.4 453 72.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.4e-184 648.7 456 73.0
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.7e-183 646.4 455 72.1
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.1e-182 643.7 455 71.6
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.9e-182 642.9 454 71.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.9e-182 642.9 454 71.4
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 7.1e-182 641.0 467 70.4
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 9.3e-182 640.6 462 72.1
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-181 640.2 454 71.4
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.6e-181 638.3 455 72.7
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.3e-180 636.7 454 71.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.9e-179 632.9 454 71.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.9e-179 632.9 455 71.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.3e-178 630.2 453 71.1
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.3e-178 630.2 447 72.0
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.8e-178 629.0 454 71.8
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.1e-177 627.1 455 71.2
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.1e-177 625.5 454 70.3
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 5.3e-177 624.8 454 70.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.2e-176 623.6 455 71.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.0e-176 622.9 454 70.3
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.4e-176 622.1 454 70.0
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 4.5e-176 621.7 454 69.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 7.6e-176 620.9 454 69.6
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.2e-175 619.4 454 70.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 3.8e-175 618.6 454 70.3
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 4.9e-175 618.2 454 69.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.4e-175 617.8 454 69.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 6.4e-175 617.8 470 69.6
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 8.4e-175 617.5 454 69.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.2e-173 613.6 455 70.5
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.6e-173 613.2 454 69.2
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.6e-173 613.2 455 70.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 3.5e-173 612.1 455 69.7
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.0e-173 611.3 471 69.4
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.3e-172 610.1 454 67.8
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.7e-172 607.8 454 68.5
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 2.5e-171 605.9 457 69.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 4.3e-171 605.1 454 70.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 9.6e-171 604.0 454 67.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 9.6e-171 604.0 454 67.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.3e-170 603.6 447 68.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-170 603.6 454 67.6
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.1e-170 602.8 456 67.3
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.1e-170 602.8 469 67.6
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-170 602.4 456 67.3
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.8e-170 602.4 456 67.3
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.8e-170 602.4 454 68.9
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.8e-170 601.7 454 67.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.8e-170 601.7 453 66.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 8.1e-170 600.9 455 67.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-169 600.1 455 67.3
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.8e-169 599.7 445 69.2
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 4.0e-169 598.6 489 64.0
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 9.0e-169 597.4 455 67.3
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.5e-168 596.7 456 68.2
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.6e-168 595.9 446 70.2
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.4e-168 595.5 458 67.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 5.8e-168 594.7 454 67.2
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 9.9e-168 594.0 452 66.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.2e-167 592.8 452 67.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.8e-167 592.0 454 66.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 4.9e-167 591.7 456 66.4
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.1e-166 590.5 454 66.5
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.4e-166 590.1 454 67.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.2e-165 587.0 459 66.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.2e-165 587.0 454 65.6
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 2.1e-165 586.3 454 67.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.1e-165 586.3 454 67.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.3e-164 582.8 534 59.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 5.1e-164 581.6 456 67.5
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.7e-164 581.3 451 66.3
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-163 580.5 453 66.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.5e-163 580.1 454 66.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 3.3e-163 578.9 455 66.2
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 7.4e-163 577.8 453 66.4
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.3e-162 577.0 436 67.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.3e-162 577.0 455 66.2
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 4.8e-162 575.1 453 65.3
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 6.2e-162 574.7 488 63.3
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 6.2e-162 574.7 453 65.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.4e-161 572.8 455 65.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 5.3e-161 571.6 453 65.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.6e-160 569.3 453 65.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.4e-160 568.9 453 64.9
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 7.6e-160 567.8 455 65.1
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.0e-159 567.4 453 64.9
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-159 567.0 457 65.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.2e-159 566.2 447 64.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.9e-159 565.8 437 67.5
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.8e-159 565.5 447 64.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 6.5e-159 564.7 456 64.5
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.1e-158 563.9 421 67.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.4e-158 563.5 453 65.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.2e-158 562.4 452 64.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.2e-158 562.0 456 65.6
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.2e-158 562.0 453 65.3
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-157 560.5 454 64.5
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.2e-157 560.5 454 64.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.7e-157 559.3 455 64.4
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.5e-157 558.9 455 64.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.0e-157 558.1 453 64.5
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.3e-155 552.0 427 67.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 5.7e-155 551.6 456 62.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.2e-150 535.8 457 62.6
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.8e-148 530.0 519 55.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.8e-148 530.0 457 63.7
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.8e-148 530.0 454 62.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.9e-148 528.9 457 63.7
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.7e-146 523.5 463 63.3
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 6.5e-143 511.5 453 60.5
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.9e-142 510.0 440 61.4
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.6e-141 506.9 416 64.4
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.1e-140 501.9 436 59.2
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.4e-139 498.8 453 59.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.3e-137 491.9 443 60.9
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 6.9e-137 491.5 423 61.7
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 7.2e-134 481.5 460 58.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.1e-133 478.4 423 62.4
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.0e-127 461.1 439 54.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.5e-126 456.4 466 56.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.2e-123 447.6 378 61.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.8e-122 443.0 508 53.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 7.2e-118 428.3 298 75.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 9.4e-118 427.9 312 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 8.0e-117 424.9 461 51.8
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.4e-116 424.1 478 52.1
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.4e-113 414.1 338 63.0
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.6e-109 400.6 458 50.2
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.1e-105 387.9 466 49.1
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.8e-96 355.1 284 64.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.9e-89 334.0 327 58.4
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.1e-84 316.6 307 56.0
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.6e-77 294.3 460 40.7
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.9e-75 285.0 280 56.8
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 6.4e-74 282.3 202 71.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.9e-73 280.8 316 50.6
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 6.0e-72 275.8 218 66.1
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 6.2e-69 265.8 237 59.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 8.1e-69 265.4 202 65.8
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.9e-66 256.9 189 66.1
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.3e-65 251.9 202 62.9
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.3e-61 241.5 251 53.8
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 4.5e-59 233.0 184 63.6
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 8.4e-58 228.8 158 74.7
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.4e-57 228.0 441 37.4
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.2e-51 208.4 215 54.4
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.3e-47 194.9 120 78.3
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.5e-46 191.4 280 41.4
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.6e-46 189.5 180 54.4
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.6e-46 188.7 139 71.2
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.8e-45 187.2 384 35.9
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.6e-43 179.1 144 63.9
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.8e-37 160.6 160 50.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.7e-37 160.2 493 30.6
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.4e-36 158.3 303 36.3
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.7e-31 139.4 165 49.1
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.4e-28 131.7 104 66.3
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.9e-26 124.0 76 77.6
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 5.5e-25 119.8 121 58.7
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.2e-24 118.6 79 78.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 3.9e-23 113.6 154 48.1
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.2e-21 107.8 113 58.4
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.1e-20 104.0 125 51.2
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 8.5e-18 95.9 82 65.9
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.5e-11 73.9 47 83.0
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 2.9e-10 70.9 50 72.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 2.9e-10 70.9 51 70.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.2e-09 67.0 42 78.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.7e-08 64.3 76 52.6
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.3e-07 61.2 50 58.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.8e-07 59.7 66 50.0
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 3.4e-06 57.4 150 36.0
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 5.7e-06 56.6 36 69.4


User provided reference genes

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