Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 3.7e-34 147.5 69 100.0
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 7.6e-27 123.2 67 80.6
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 1.3e-26 122.5 68 80.9
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 4.9e-26 120.6 66 80.3
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.4e-26 120.2 68 77.9
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 6.4e-26 120.2 68 77.9
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 8.4e-26 119.8 63 82.5
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.4e-25 119.0 68 79.4
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.4e-25 119.0 68 79.4
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 1.4e-25 119.0 68 79.4
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 1.9e-25 118.6 63 84.1
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 1.9e-25 118.6 63 84.1
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.4e-25 118.2 66 78.8
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 2.4e-25 118.2 66 77.3
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 2.4e-25 118.2 66 77.3
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.4e-25 118.2 68 77.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 2.4e-25 118.2 66 78.8
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 3.2e-25 117.9 63 82.5
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.2e-25 117.9 68 77.9
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.2e-25 117.9 68 77.9
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.2e-25 117.9 68 77.9
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.1e-25 117.5 68 73.5
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.1e-25 117.5 68 76.5
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 4.1e-25 117.5 66 78.8
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 4.1e-25 117.5 66 77.3
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 4.1e-25 117.5 65 81.5
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 4.1e-25 117.5 63 81.0
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 5.4e-25 117.1 68 76.5
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 5.4e-25 117.1 63 82.5
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 7.1e-25 116.7 68 76.5
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 7.1e-25 116.7 66 77.3
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 7.1e-25 116.7 68 75.0
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.2e-25 116.3 66 75.8
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 9.2e-25 116.3 66 77.3
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 9.2e-25 116.3 66 77.3
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 9.2e-25 116.3 66 77.3
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 9.2e-25 116.3 66 77.3
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 9.2e-25 116.3 68 77.9
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 9.2e-25 116.3 68 76.5
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 9.2e-25 116.3 68 73.5
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.2e-24 115.9 63 81.0
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 1.2e-24 115.9 66 75.8
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.2e-24 115.9 68 75.0
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 1.6e-24 115.5 68 75.0
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 1.6e-24 115.5 65 80.0
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.6e-24 115.5 68 75.0
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.6e-24 115.5 68 75.0
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 81.0
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 81.0
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 81.0
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 2.1e-24 115.2 68 76.5
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 81.0
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 66 75.8
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 66 75.8
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.1e-24 115.2 66 75.8
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 2.1e-24 115.2 63 81.0
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 2.1e-24 115.2 65 76.9
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.1e-24 115.2 66 80.3
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 2.1e-24 115.2 68 75.0
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 2.1e-24 115.2 68 75.0
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 2.1e-24 115.2 60 83.3
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 2.7e-24 114.8 63 81.0
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 2.7e-24 114.8 63 81.0
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 2.7e-24 114.8 68 73.5
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 2.7e-24 114.8 63 79.4
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 2.7e-24 114.8 66 74.2
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 2.7e-24 114.8 66 72.7
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.5e-24 114.4 68 72.1
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.5e-24 114.4 68 72.1
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.5e-24 114.4 66 74.2
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.5e-24 114.4 68 73.5
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 4.6e-24 114.0 63 77.8
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 4.6e-24 114.0 63 77.8
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 4.6e-24 114.0 66 74.2
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 6.0e-24 113.6 66 74.2
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 6.0e-24 113.6 68 70.6
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 6.0e-24 113.6 66 74.2
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 6.0e-24 113.6 60 81.7
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 7.8e-24 113.2 66 74.2
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 7.8e-24 113.2 66 75.8
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 1.0e-23 112.8 68 75.0
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 1.0e-23 112.8 66 72.7
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 1.0e-23 112.8 66 74.2
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 1.3e-23 112.5 68 73.5
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.3e-23 112.5 68 72.1
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.7e-23 112.1 60 80.0
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 1.7e-23 112.1 63 76.2
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 2.3e-23 111.7 66 75.8
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 3.0e-23 111.3 63 76.2
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.0e-23 111.3 60 80.0
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 3.9e-23 110.9 65 73.8
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 6.6e-23 110.2 64 73.4
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 6.6e-23 110.2 58 84.5
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 6.6e-23 110.2 59 79.7
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 6.6e-23 110.2 75 70.7
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 8.6e-23 109.8 58 81.0
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.1e-22 109.4 63 74.6
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 1.1e-22 109.4 63 76.2
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.1e-22 109.4 59 78.0
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.1e-22 109.4 68 69.1
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 1.5e-22 109.0 66 72.7
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.5e-22 109.0 66 69.7
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 1.5e-22 109.0 63 74.6
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 1.5e-22 109.0 63 74.6
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 1.5e-22 109.0 63 74.6
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 1.5e-22 109.0 58 81.0
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 1.9e-22 108.6 62 75.8
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 1.9e-22 108.6 63 74.6
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.5e-22 108.2 62 74.2
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 3.3e-22 107.8 58 82.8
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 4.3e-22 107.5 63 71.4
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 4.3e-22 107.5 60 75.0
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 5.6e-22 107.1 63 71.4
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.6e-22 107.1 58 79.3
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 7.3e-22 106.7 58 77.6
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.3e-22 106.7 67 68.7
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 7.3e-22 106.7 58 81.0
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 1.2e-21 105.9 58 79.3
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.2e-21 105.9 58 77.6
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 1.2e-21 105.9 66 71.2
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 1.6e-21 105.5 58 77.6
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 1.6e-21 105.5 58 77.6
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 2.1e-21 105.1 63 73.0
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 3.6e-21 104.4 54 83.3
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 4.7e-21 104.0 58 77.6
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 4.7e-21 104.0 58 75.9
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 4.7e-21 104.0 58 77.6
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 6.2e-21 103.6 58 75.9
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 6.2e-21 103.6 58 75.9
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.1e-21 103.2 58 74.1
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.1e-21 103.2 58 74.1
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 8.1e-21 103.2 60 71.7
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 1.1e-20 102.8 59 72.9
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 1.4e-20 102.4 61 68.9
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 1.4e-20 102.4 60 70.0
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.4e-20 102.4 57 77.2
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 1.8e-20 102.1 60 76.7
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.8e-20 102.1 58 72.4
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 2.4e-20 101.7 58 74.1
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 2.4e-20 101.7 58 75.9
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 4.0e-20 100.9 60 71.7
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 1.2e-19 99.4 58 75.9
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.2e-19 99.4 60 71.7
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.5e-19 99.0 60 73.3
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 2.0e-19 98.6 58 72.4
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 2.0e-19 98.6 58 72.4
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 2.6e-19 98.2 64 65.6
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 2.6e-19 98.2 58 74.1
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 5.8e-19 97.1 62 67.7
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 7.6e-19 96.7 58 74.1
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 1.7e-18 95.5 54 72.2
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 2.9e-18 94.7 61 59.0
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 1.1e-17 92.8 57 70.2
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 1.2e-16 89.4 53 73.6
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.2e-16 89.4 67 56.7
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.2e-16 89.4 58 70.7
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.6e-16 89.0 55 70.9
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 6.0e-16 87.0 45 84.4
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.3e-15 85.9 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 6.6e-15 83.6 62 53.2
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 1.5e-14 82.4 47 74.5
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 9.6e-14 79.7 54 63.0
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 2.8e-13 78.2 67 53.7
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 6.2e-13 77.0 42 78.6
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.8e-12 75.5 60 50.0
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.8e-12 75.5 60 50.0
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 2.4e-12 75.1 65 50.8
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 2.4e-12 75.1 57 52.6
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 1.3e-10 69.3 55 52.7
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.3e-10 69.3 52 57.7
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 1.7e-10 68.9 33 84.8
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 1.1e-09 66.2 47 61.7
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 1.9e-09 65.5 49 57.1
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 3.0e-07 58.2 50 48.0
SGA_v2.0_scaffold234G43604 Striga asiatica HOM05D004074 ORTHO05D405016 3.3e-06 54.7 32 68.8


User provided reference genes

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