Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 5.4e-44 180.6 94 100.0
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 3.3e-33 144.8 97 79.4
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 2.8e-32 141.7 97 78.4
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.1e-31 139.8 97 78.4
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.3e-31 137.5 97 77.3
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.0e-30 135.6 97 76.3
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 3.4e-30 134.8 97 74.2
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 4.5e-30 134.4 97 76.3
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 5.8e-30 134.0 97 75.3
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 7.6e-30 133.7 97 74.2
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 9.9e-30 133.3 94 76.6
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.8e-29 131.3 97 73.2
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.8e-29 131.3 97 73.2
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 4.9e-29 131.0 97 73.2
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.4e-29 130.6 97 73.2
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 8.4e-29 130.2 94 73.4
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-28 129.8 97 72.2
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-28 129.8 97 72.2
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-28 129.8 97 72.2
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.4e-28 129.4 96 71.9
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 2.5e-28 128.6 95 76.8
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 2.5e-28 128.6 97 75.3
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 2.5e-28 128.6 97 72.2
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 7.1e-28 127.1 97 74.2
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 7.1e-28 127.1 97 73.2
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 9.3e-28 126.7 97 70.1
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.6e-27 125.9 97 74.2
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.6e-27 125.9 97 71.1
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 2.7e-27 125.2 94 72.3
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 3.5e-27 124.8 97 73.2
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 4.6e-27 124.4 94 72.3
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 1.3e-26 122.9 97 68.0
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.8e-26 122.5 104 72.1
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 3.0e-26 121.7 104 69.2
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 3.0e-26 121.7 97 69.1
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 3.9e-26 121.3 97 69.1
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.7e-26 120.6 97 67.0
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 6.7e-26 120.6 97 67.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 6.7e-26 120.6 97 66.0
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.7e-26 120.2 97 66.0
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.1e-25 119.8 97 66.0
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.1e-25 119.8 97 66.0
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.9e-25 119.0 97 66.0
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 2.5e-25 118.6 79 75.9
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 3.3e-25 118.2 97 66.0
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 4.3e-25 117.9 93 69.9
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 4.3e-25 117.9 107 67.3
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 9.6e-25 116.7 97 67.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 3.7e-24 114.8 97 62.9
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 4.8e-24 114.4 97 66.0
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 4.8e-24 114.4 97 68.0
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 4.8e-24 114.4 79 72.2
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 8.2e-24 113.6 98 66.3
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 8.2e-24 113.6 97 62.9
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 8.2e-24 113.6 97 61.9
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.1e-23 113.2 97 64.9
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.1e-23 113.2 97 64.9
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 4.0e-23 111.3 103 63.1
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.0e-23 111.3 107 59.8
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 5.3e-23 110.9 103 64.1
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 6.9e-23 110.5 106 64.2
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 9.0e-23 110.2 78 73.1
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 9.0e-23 110.2 97 61.9
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.5e-22 109.4 96 62.5
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 2.0e-22 109.0 104 65.4
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 2.6e-22 108.6 105 63.8
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 4.5e-22 107.8 106 63.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 7.6e-22 107.1 96 62.5
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.0e-21 106.7 104 63.5
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.0e-21 106.7 104 65.4
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.0e-21 106.7 107 60.7
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.3e-21 106.3 96 62.5
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 1.3e-21 106.3 97 67.0
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.7e-21 105.9 96 63.5
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.7e-21 105.9 95 65.3
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.7e-21 105.9 105 61.9
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.2e-21 105.5 106 60.4
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.2e-21 105.5 104 63.5
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 2.2e-21 105.5 104 60.6
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.9e-21 105.1 107 59.8
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 2.9e-21 105.1 107 59.8
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 3.8e-21 104.8 96 60.4
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 3.8e-21 104.8 107 58.9
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 4.9e-21 104.4 109 59.6
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 4.9e-21 104.4 96 63.5
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 6.5e-21 104.0 104 62.5
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 6.5e-21 104.0 105 64.8
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 8.4e-21 103.6 96 63.5
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 8.4e-21 103.6 99 61.6
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 8.4e-21 103.6 97 61.9
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.1e-20 103.2 97 61.9
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.1e-20 103.2 104 59.6
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.1e-20 103.2 96 62.5
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-20 102.8 96 59.4
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.4e-20 102.8 96 59.4
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.4e-20 102.8 73 74.0
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.9e-20 102.4 97 60.8
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.9e-20 102.4 94 61.7
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.9e-20 102.4 94 61.7
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.9e-20 102.4 94 61.7
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 1.9e-20 102.4 101 58.4
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.5e-20 102.1 94 61.7
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.5e-20 102.1 94 61.7
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.5e-20 102.1 96 63.5
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 2.5e-20 102.1 97 60.8
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 2.5e-20 102.1 97 60.8
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 3.2e-20 101.7 104 57.7
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 3.2e-20 101.7 98 62.2
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.2e-20 101.7 97 59.8
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 4.2e-20 101.3 107 58.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 7.1e-20 100.5 94 60.6
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 7.1e-20 100.5 98 62.2
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 7.1e-20 100.5 98 62.2
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 9.3e-20 100.1 98 64.3
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 9.3e-20 100.1 105 59.0
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-19 99.8 98 60.2
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.6e-19 99.4 85 65.9
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.6e-19 99.4 105 55.2
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.6e-19 99.4 97 57.7
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.1e-19 99.0 107 57.9
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 3.5e-19 98.2 103 57.3
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 3.5e-19 98.2 98 61.2
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 3.5e-19 98.2 96 59.4
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 3.5e-19 98.2 98 61.2
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 4.6e-19 97.8 96 62.5
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 4.6e-19 97.8 107 57.9
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 6.0e-19 97.4 97 58.8
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 6.0e-19 97.4 103 59.2
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.0e-19 97.4 101 55.4
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 7.9e-19 97.1 87 65.5
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 7.9e-19 97.1 107 57.9
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.0e-18 96.7 107 57.0
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.3e-18 96.3 105 56.2
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.3e-18 96.3 82 64.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 1.8e-18 95.9 82 70.7
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.3e-18 95.5 96 58.3
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 2.3e-18 95.5 101 57.4
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 3.0e-18 95.1 96 58.3
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.9e-18 94.7 80 66.2
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 3.9e-18 94.7 94 60.6
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 3.9e-18 94.7 94 60.6
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 3.9e-18 94.7 94 60.6
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 5.1e-18 94.4 105 55.2
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 6.7e-18 94.0 97 58.8
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 6.7e-18 94.0 97 58.8
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 1.5e-17 92.8 88 64.8
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.5e-17 92.0 108 52.8
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 2.5e-17 92.0 97 58.8
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.3e-17 91.3 81 64.2
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 5.7e-17 90.9 100 60.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 5.7e-17 90.9 99 54.5
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 7.4e-17 90.5 97 57.7
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 7.4e-17 90.5 81 61.7
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 7.4e-17 90.5 81 61.7
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.4e-17 90.5 105 51.4
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 9.7e-17 90.1 81 61.7
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.3e-16 89.7 97 53.6
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.3e-16 89.7 106 52.8
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.6e-16 89.4 78 64.1
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.8e-16 88.6 97 53.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.8e-16 88.6 91 57.1
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.7e-16 88.2 97 53.6
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 6.3e-16 87.4 106 50.0
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 8.2e-16 87.0 100 56.0
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.1e-15 86.7 97 55.7
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 4.1e-15 84.7 101 55.4
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 4.1e-15 84.7 81 59.3
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 4.1e-15 84.7 81 59.3
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 6.9e-15 84.0 87 54.0
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 9.0e-15 83.6 81 59.3
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-14 83.2 81 58.0
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.5e-14 82.8 103 51.5
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 2.6e-14 82.0 104 52.9
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 2.6e-14 82.0 82 61.0
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 3.4e-14 81.6 83 60.2
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 1.7e-13 79.3 95 51.6
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 9.4e-12 73.6 67 56.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 1.0e-10 70.1 96 45.8
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 9.7e-09 63.5 89 46.1
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.7e-08 62.8 84 48.8
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 3.7e-08 61.6 78 53.8
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 1.4e-07 59.7 72 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.8e-07 59.3 52 55.8
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 2.4e-07 58.9 72 50.0
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 9.1e-07 57.0 62 56.5
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 1.2e-06 56.6 61 54.1


User provided reference genes

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